RNA id: XR_005640757.1


Basic Information

Item Value
RNA id XR_005640757.1
length 2370
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120568725
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12100742 ~ 12103252 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtcatttcaggcaaagagTGCAACCCtgctcctccccttccacctccagtcaTCATCACCCACGGCACCCTGGGTCTTCCTCCGGCAGACCTCTCCCGTTGACTCCTTCGGTCCGGTCTTCGGGCtacttcaccaccaccaccaccagtgtccagactccatcggggggataTGTCTCGGCTtttctacccctttaaaaaaatattttttataaaaatggaGTCTAATCTTCAAAGACTCTTTACATTTCATATATGCATATGCACAAATAAACTTTGCATAtttgcaacaaagtctctcctgattgaaatggtgGAGTGCAACCTCATCGATGGATGGCTGGAGTTGCCgggAAACGCTGTGGATCCTGGGGTTATTGTGTATAGCTTTATTGATGCTTTGAATTCAAatgaattaaaagtaaaaaattgtATGAGTATgagtataatataatattttcatGACATTTAATTGAGGTTAAGCTGGATTTAATGTAAGCAGAATTGCTGCTTCCTATTGAAACAGTCATGGAAAATGCGAGAGGAAACAGACTGTTTTGACCATTTGCTGATGGGGCTGCATAAGGGTTCAGCAGCTCCTTCAACAATGAGGATTGTGATTTTAAATGTCATTGCCAGCGTGAAGCGGCATTCCGGCAAAATAGTCCAAGTAGGTCAAGAAGCATTGTATTCTCATCCTCTGCAGAAAATGCATAGCGATAACAAAGGGCACAGAGCATAGGCAGAAGCCTGTCCTGCATTTGACATTGACTATCTCTACTTTCACCGAAAAAGACTGAAACATTCACAATCTATAGTCTATAATTTGCCGCTTATCAGCAAGTCCGACCATCAAATAATAGTTTCTGAAATGTTTGGGCCTATTTTTCATTTTGACAATGCATAAAATGGAACTGCTCAACTTTTCAAATGAGCTGCCGCATCTTGCAATGGAGGAAGACAACTACTGAATTGCTttcaaaagtgaaaaacactggtACACAACAGTCTTCCATATTTAgagacataaaaacatcagaaGCACAATTCAGGTACTGTTAATATCTATTTGCCTGACAAGGCAGTGTCCTTGAACAACATAAATCAATTTTGTGTAAAACGTTTATTGACCTTTAAAAATGTTGAGAGATCACTGTTATTTCTGTCAGCCTTTGACTTTGACTGTCTGTCTGACGTGACTCCTAACATTGCACTCAATGATAATGTCGGATTTCAGAATCCTatcaaatatatacagtatgaatccctgatattgcgatatcagATATTGGTTATTTGCATATAAAAACCTTTCTGCTCCAGAGAAAAGATTGCTTCGGGATGCTGCATCTACAAAGTGCTCCTACAATatatgaatatacagtatgccatgcaaaaaatataaaattataatGGAAAGAGTTAATTATTCAGAACCTTTTTTGCAAATTAACCTTATAAGTcttcaaaacataaaaataggttatttatcATGTGAAagtgtacttgtacttttaccaTGAAGTACATTTGTCATAAAATCAGAGAAAATATAAGTGGAGTCTTGTGAGATAATTACCCTTGGCTATGGTATATGCCTATGATCTACAACCCTTGCTAGAGAGAAGATGCTGAAGAAAATAGAGGCACACAACGGGATCAATATCTATTTCATGCTTCTGTAGAACAATTGGCCCTGTACAATGTATTGGTGCAACAACTCAATTTTGACCTGCTCTGTGTGTATGAATTGGTATTAAGGAGTTTGGTCACATAGAGCCTGATGACGCCTGTAAGTTTTATGTTACAGTCAAATAAAATAACACAGAGTCATTTTTATCATTAGTGCAGCTCCAGCTCAGCAGGGCCCTTCTGTTTTTCTGGGACAATGCACCATGTTTGTTGTGGTTATGGATATCCTGTTGCCTGTTTGCGTATTTCtgtatgtttcctgttttgtatatttattctgtatatttctgttcctgttttgtgttttctgagtagtgtatgtttctgtttcctgttttattttgatagtctgttttTTGTCTTGTCGTGTCTAGTTTGCTTCCTGCGTTTTCCCGCCTGTGTCATTGTCTAATGTGCTCCACCTGTTCCCCAGCCCTGTTGTCACCTGTGTTTGCTCGTTACCTAgtttatttagcctctgtgtttccATTGTCTCTTGTCAGATCGTTGTTTGTGTTCGTGTCTTGCCTGGTCAGTTTGTTCCTGTCAGCGGTTTTCACCCATGTGGCTGTATTTGGTTTTCCTGTGATCTTTTGTTCCTGTTAGTTTTTGCTTTTTGGATCTCCTTCGGTTTGCTCCctgttttttgtgtttaataAACCCTTGAGCTCAACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153297 lncRNA downstream 41626 12020953 ~ 12059116 (-) True G113731
TU153295 lncRNA downstream 64993 11991744 ~ 12035749 (-) True G113729
TU153285 lncRNA downstream 142081 11958450 ~ 11958661 (-) True G113722
TU153268 lncRNA downstream 224714 11795705 ~ 11876028 (-) True G113708
TU153258 lncRNA downstream 489863 11610597 ~ 11610879 (-) True G113700
TU153319 lncRNA upstream 4101 12107353 ~ 12123096 (-) True G113748
TU153326 lncRNA upstream 23705 12126957 ~ 12128145 (-) True G113755
TU153347 lncRNA upstream 59909 12163161 ~ 12175582 (-) True G113772
TU153376 lncRNA upstream 105280 12208532 ~ 12208970 (-) True G113799
TU153383 lncRNA upstream 125727 12228979 ~ 12229338 (-) True G113806
XM_039815501.1 mRNA downstream 569937 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039815499.1 mRNA downstream 575905 11519469 ~ 11524837 (-) True selenop2
XM_039816321.1 mRNA downstream 599004 11500364 ~ 11501738 (-) True LOC120568667
XM_039815056.1 mRNA downstream 638130 11390884 ~ 11462612 (-) False zswim5
XM_039816569.1 mRNA upstream 6020 12109272 ~ 12113247 (-) False pigr
XM_039816568.1 mRNA upstream 6020 12109272 ~ 12113247 (-) True pigr
XM_039816570.1 mRNA upstream 13550 12116802 ~ 12122078 (-) True dad1
XM_039815524.1 mRNA upstream 28185 12131437 ~ 12152081 (-) True tgm1l1
XM_039816553.1 mRNA upstream 73605 12176857 ~ 12207670 (-) True rem2
unassigned_transcript_557 other downstream 1211790 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 1211895 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2590261 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2604990 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2697130 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 114810 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 497928 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 657663 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 981309 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 2510361 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile