RNA id: XR_005640758.1


Basic Information

Item Value
RNA id XR_005640758.1
length 929
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC120568726
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15746177 ~ 15759108 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcCCGTGTTGTCACTGCATGGCTCCTAGTTGTCAAAAGTTAAATAACACAAACTGCGGTCACCATGATGTGGGTTATCTTGCACACATTTTAAAGTCTGCCTTTTGATGAAGAATTTGAGATGAAACTACCAGCCTCGGGATATTGTTATATCTGACCAAGCTTTCAGAATCACAAGCGTCTTTCTTAGAGGATTACCAAACATGAAAACAGCAGGATAACAAGGGTCGCATGGGGCTGGATTGGGTGCGATGCGGGGACAGAAAGACACCCTGGAGAGAAAGCCAGTCAATCAAAGGGCTGACACATAGAGACAGCCAGCCAGCCATTCACACTCACATTTACACCTACAGGCAATTAGAGTTGCCAATTAGCCTAACATGCATGTCTTTGGACTGTGGGAGGAAGCCGTTGGCCCCAGAGAAAAACCACGCTGACATGGGCTACCCAGAACCTTCATGCTGTGAGGCAACGGTGCCAACCACTGTACCACCGTGATGCCCCCCTTTAATACATCTATTAATGTGTGACCAGTCTCATCCACACTGATAGTCAGTGAAGAGCGACTTGTCTCCATCAGCTGGGAACCTTCAccagtgtctttgtgtgtgcgtctgtcagCACAAGAGGAGGGTTTCAGGCATCATCACTCAGGCATCCTCTTACTGGGCTCACTGGACTAAAGCCTGGGAACCAGACCAACAATCGCCACTCTCATTAAGCAAATGGACCCAGGAAGGCAGACTGCTGCTGAACTCAATTACAACCTCCCATACAGGCAGGCAAAACACAAAGgcagcatctgaataacgtgaTGGTGAAGACGGACAGGATGTTTGCCAGTTGACAGTAAAGAGCAACAAGTAGCGAAACAAGAGGATGACCTGAAACAAAAGTCCCGGACTTCAAAAGAGAACTTAGCTAAATGAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155115 lncRNA upstream 68834 15677093 ~ 15677343 (+) True G114998
TU155105 lncRNA upstream 120854 15625102 ~ 15625323 (+) True G114991
TU155054 lncRNA upstream 177683 15566394 ~ 15568494 (+) False slc35a3b
TU155048 lncRNA upstream 196257 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA upstream 196257 15549306 ~ 15549920 (+) False G114944
TU155129 lncRNA downstream 83593 15842701 ~ 15843094 (+) False st6galnac3
TU155183 lncRNA downstream 84046 15843154 ~ 15848292 (+) True G115055
TU155185 lncRNA downstream 161953 15921061 ~ 15921519 (+) False st6galnac5a
TU155232 lncRNA downstream 334902 16094010 ~ 16097398 (+) True G115095
XR_005640737.1 lncRNA downstream 344610 16103718 ~ 16107792 (+) True LOC120568625
XM_039816612.1 mRNA upstream 949 15737192 ~ 15745228 (+) True rabggtb
XM_039814707.1 mRNA upstream 12662 15725767 ~ 15733515 (+) True acadm
XM_039814709.1 mRNA upstream 21789 15720938 ~ 15724388 (+) True LOC120567732
XM_039814705.1 mRNA upstream 26001 15709472 ~ 15720176 (+) True LOC120567730
XM_039814706.1 mRNA upstream 26001 15709472 ~ 15720176 (+) False LOC120567730
XM_039816409.1 mRNA downstream 5575 15764683 ~ 15843087 (+) True st6galnac3
XM_039815027.1 mRNA downstream 106478 15865586 ~ 15921531 (+) True st6galnac5a
XM_039815029.1 mRNA downstream 197251 15956359 ~ 16031840 (+) False ak5
XM_039815028.1 mRNA downstream 197255 15956363 ~ 16031840 (+) True ak5
XM_039816241.1 mRNA downstream 319379 16078487 ~ 16093938 (+) False miga1
XR_005640847.1 other upstream 22380 15723729 ~ 15723797 (+) True LOC120569145
XR_005640846.1 other upstream 22974 15723135 ~ 15723203 (+) True LOC120569144
XR_005640848.1 other upstream 23604 15722507 ~ 15722573 (+) True LOC120569146
XR_005640849.1 other upstream 23929 15722139 ~ 15722248 (+) True LOC120569147
TU155036 other upstream 217408 15520799 ~ 15528769 (+) False zgc:153115
TU155130 other downstream 5590 15764698 ~ 15800493 (+) False st6galnac3
TU155276 other downstream 467199 16226307 ~ 16228522 (+) False LOC120568164
XR_005640725.1 other downstream 679917 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other downstream 679917 16439025 ~ 16526428 (+) False LOC120568419
TU155758 other downstream 1648383 17407491 ~ 17440463 (+) False LOC120568596

Expression Profile