RNA id: XR_005640761.1


Basic Information

Item Value
RNA id XR_005640761.1
length 1734
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120568731
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30144044 ~ 30149629 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGAGTTTTCAATGATCGGATAAGGCAGTTTGTGCAGTGTTGTGTGCTAGCCTATCATGTTTTCCCTACATTCAAAGCACTTTTCAAAATTGCCCAATATGTGCATGGGTTTATTTGAATTAAAGGGAGGCAAAAAGGATCAGCTTGCAGTGACACCTTTCGTAAGGAAAATTTccatggtattttttttttggcctggGGGTGTGGGGATAATGTCACGGTGACGCGTAATGAAGCCTGGACTACTGACACTCAACACACACGCGGGCTACGTGCTGCCCCCGAGTCCACTTTTCGGACGGCCTATCAAGATAGCAACACAGAACGCCGTTGCCATTATACCGACAGCTGACGTGACATTTGATCCCTGTCAACAGCTGACATTACTTCACGGTTGACACACATCTGGCCACCAACCAAAAAACCCCGAGTTCCATTTTGCAGTGTCTCTTCTGCATGGTCCAGGGCCTCCATGGTGTGGAGGGGCAGCTCCAAGGGCTCCGCCAGCGGCAGTCCCACAGAGTTAGACTGTCCACACCTGCAGGACTGACGGAATTGCCTGAACTCCTCCCGCAGGAGATGGCCTCTGGAGTAGATGCACTGGAGTGAGTGGAGAGAAGGCCAATTCATCTCCAGGGAACGATGCTGGGACATTGGGGCAAGACAACTTGGAGGAATTGGGGCGTTGGAGGGTCTGATAGATCCTTGGAGGTGATGGTTGGCTGTCCTGACTGGCTTGTTGGGTTGCtggtttgtttaaagaaaaaaaagatgtgggGGGGAGGTGGTTAGGGGCAGATGTGCGTAATACGTAATTAGATTCTCTATTCTCTGCAAAAGCTTACTTgattatgtacacacacacacacacaccacaatgtGGCTAACTATACCTGGAAATAACACTTTGGGGGCTTGGGCGAATCTGCGGTCATTCTGGGGCTCCTTATCTGAATGATAAATTGGATTGGGTCTAAAAGTAAACAAGGGAGCAATTAAATTGTCAACTTGCATATGTCAACAAATTATTAAATTGCACATGTCAACAGCAAATGGTTAAACCTGCTTATACGtttgctttggacaaaagcatcTGCCAAATGGACATTCATTATTACCTTCTTTTTCGTTTTAGGGCATGGTGGCTCTCCTCCTCAGACTGGATGTCAGTGGTGTCGCAATCTTTATTTACATATCGTTCCAGGCTCCTCACTGCCTCATCATGACTATCTACAAACATAGAATAACAGAAGTACAGTCAGAGTCAGGAGAAATATTTCAGACAGGGCAAAAAAAATGATTGATTGTTAATTATGATTCTTATTGTCAAAAGCAAATTTGAGAACACCCACCACGAGTTATGAGGAGACGGATTGGTTGGTATGTGTGCCATCCATGTCCAGGCTGTTCTTGCTTCAGGATGGCTGCATTCAGCCTAATAGAGTCCTTAGGAGGGTATGGGGGCCAGAAGACTTTATCCCCTTCGACCCATGTGTTTGGCACAATTTCATTTGCACCACTGCTAAACTGTACAACGCACCACtgggtcattttttttttttttttaaaggcaggGGATTTGAAAGACTGTATAGAAAACAAAGCACACCAAAATTAACTTATGAAGTGATAAACAGATGAACTGAGTGCATAAACTGATTATAGGAACtgatttggacattttggacattttaatTGATATGAATGATGGGAATGGCAATGAACTGTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160308 lncRNA downstream 58469 30085316 ~ 30085575 (-) True G118966
TU160303 lncRNA downstream 103218 30040567 ~ 30040826 (-) True G118961
TU160301 lncRNA downstream 128291 30015553 ~ 30015753 (-) True G118959
TU160294 lncRNA downstream 175824 29968014 ~ 29968220 (-) True G118952
TU160292 lncRNA downstream 177301 29966527 ~ 29966743 (-) True G118950
TU160334 lncRNA upstream 70084 30219713 ~ 30220102 (-) True G118990
TU160363 lncRNA upstream 125078 30274707 ~ 30275347 (-) True G119012
TU160366 lncRNA upstream 166467 30316096 ~ 30319838 (-) True G119014
TU160405 lncRNA upstream 291260 30440889 ~ 30448161 (-) True LOC120568429
TU160451 lncRNA upstream 645338 30794967 ~ 30795784 (-) True G119073
XM_039814658.1 mRNA downstream 169755 29970090 ~ 29974289 (-) True LOC120567690
XM_039814654.1 mRNA downstream 453709 29685050 ~ 29690335 (-) True LOC120567685
XM_039814718.1 mRNA downstream 494352 29636103 ~ 29649692 (-) False LOC120567741
XM_039816749.1 mRNA upstream 170323 30319952 ~ 30438652 (-) False LOC120568974
XM_039816748.1 mRNA upstream 170323 30319952 ~ 30438652 (-) True LOC120568974
XM_039816750.1 mRNA upstream 205245 30354874 ~ 30438652 (-) False LOC120568974
XM_039815957.1 mRNA upstream 292756 30442385 ~ 30477185 (-) False LOC120568429
XM_039816284.1 mRNA upstream 332959 30482588 ~ 30524862 (-) True LOC120568640
TU160248 other downstream 494252 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 723392 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 1157725 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 2425285 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 2429654 27713467 ~ 27714390 (-) False G118524
TU160542 other upstream 714617 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 714617 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 976801 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 1020293 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 1020753 31170382 ~ 31171610 (-) False G119169

Expression Profile