RNA id: XR_005640772.1


Basic Information

Item Value
RNA id XR_005640772.1
length 2362
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC120568747
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20580520 ~ 20585677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCCTGGTTAATGATGACGTATTTACGGCACCTTGctgaataacaaaaacaaactgtcacCTCGTACGCTTCTGTCAGCGGTGCTTGTTGGAGGATGCGACGGCGGGCAAAAAGACGCTATAAAACCGGATAATAGAAAGCGTAAAAACGGCGCTGAAAAGGCGACAATTAAAAAAGGAAAGCTCTAGAAAGTGACGTGGCCAGATGTGCTAAACTGAGCAACTTTTTCATTAAAACCAGTCAGAGTGaaacgccaaatgaagacgATGAGACCGCAGCAGCTAATTGTCCAGTTGGCTGCTAACAGTGAAAATGAAGAGCCAGTACCAAGCACCCGCCGTGAGCTCAGGACTCCAGAGTGGGCAGGGCTCAAGATAGCAGCATAGCCACACAGTGATGACCAGGGAGGAATTGCAGGATGCAGCAGCCTGACAGAAGAGCCCAGTTACCCTCCTCTCCTGCCTGCTGATTGGGCGTCTCTCCGCTGAGACCTCTTACGAACGCTCCTGATAACCAAATGAGCATCTAAAGTAAATAACAGGCTGACACACGGCAGGCTCCCAAACAGAACATACAGCTGCTCATTAAAATCTCCCCAGCCGTTGCCATACATTTGATACAGGTTGTAGCGAGAGTCTCCCCACTGGTTACAGGTTACACTTGTGCACACTCACGGTTTTCCTGTGCAATGAGGGATGATTAGCATCATTTTAGGCACGCACACTTTTTACCACCTTATTAGTTTAACCTTCTACAAGCTTGTTTTCACCCTGTATGATTGTCTGACTGGTCATTCCAAGATGTCAGCAAATACTTTTAACTGATGGCCGGATCGACAAAAATATAACCCAAGTTGTAGTTTTCCTTTCAAAAACATCCCCTGTAGCATAGACTGTATTAAGTCTTATGTGAACCCATTGACTGAGCACAACAACAGAGCTGCTTCCTCATGCTCCCCTGACCAGGCAGACCCTTTGGCTGAGGCGACCAATTAATTATAGACGTGACTTTAAAACTTCCTGTTTTTCCCTCCTTAATTAAGCCAATCTGCCCTGCTGCTCTAAAGAGAGGAAATACCTCAAAATAGTTCCCAATTTCAGCACATTCAATTATTTTGTGCCCAGTAGCAGATTGCATCGGCCGTGTTAATGTACGGACCAACGATGTTTGATCACAGGGAAATTATGTCTGTCATTTCTTCCTGCTTCGCCCCCGATTAATGTGGGAATTGTGAGGCGAGTTGGTGCCCAACGTGGGCACAGCCCGCGCACGGATTACTAACTACGTGCCCTCAGTCAGGCCCATCCAACATCAATCTCTGCCTGAGATGTTTATTATTACACTCATGCAGTCACTTAttctgaagagagagagaaaaaaatcccTGATTTATGCCTCCACTGTTACCCTTTCCTGTCCTCATTTATGAAAACAAAATTCCAGTGAATTCCTGCAGTATTAACACTAAGCAGTTACGAGGTCAAGCTTTCACTTACACTGCACAATTCAACTGGCCGGGCACAGTCCACTCACAGATATTGTGTTGTTTGCTGCAGCTTCACTGTGGCTTTGTTATGCCACGTAAGCCGAGTAAAGGAGTCTGAACACAAACTTACAAACTGACCTTGACACCAGACACGCTTCATATCTCTCtccgcctttttttttttttttacacttacaCTAAATCTACAGCCAGTGTTCAAGAGCACCAAGGCAACTTGAGTGTTATCATAAATGCACCACACTTGTTCAACACCTGCCAGTGTTTTTCAGTGGTGCCCTTTTCAACTTTGAACTGAAACTCACCTCCAGGCCTCACCCTCTGTGTTTTTCACTGGGAAACAGGAAAAAGGAGGAGAAAGTGAAGACCTACGTGGAATGAAAAACCAGGGCTGGAACATTTTAAAAGGGTACTTAATGTGAAGTGttcctttattattttattagtcATATCAGGTGAATACCATCTATTGTTCTCTGCTGTGGTATCTGTGTGTCAGATGTCAGTGAGGTTGTGGGTGTGTACCATCAGAGAGTATTGTATATTTCATGATACCCCCGTTTTACCTCATTAAATACATATTCGTAATATGGACAGTATATTAGTATTTCAATAGTTTAttttatctgtatttattttgggTAAAGGCTTCTCTGCGACACCTTTTCAATTATGATTTTGAAATAGAGGCCCTGAACTAAATAAGGGCGGGTGACAGAGAAGGTGAATTTTATTTTAGCTTTTTATCTCTTAAgaacatttttatgatgtaccGTATGGTAATGTGGGTAATAAATTACGCACCAGTAACACATACAAGTAAACTCCttataattttacattttaaatgaaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156870 lncRNA downstream 188800 20390357 ~ 20391720 (-) True G116368
TU156868 lncRNA downstream 192458 20387498 ~ 20388062 (-) True G116366
TU156823 lncRNA downstream 254646 20325649 ~ 20325874 (-) True G116328
TU156782 lncRNA downstream 643107 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 698111 19879905 ~ 19882409 (-) True G116293
TU157004 lncRNA upstream 182958 20768635 ~ 20771028 (-) True G116484
TU157021 lncRNA upstream 220476 20806153 ~ 20806691 (-) True G116499
TU157030 lncRNA upstream 241835 20827512 ~ 20827711 (-) True G116508
TU157050 lncRNA upstream 333292 20918969 ~ 20919716 (-) True G116525
TU157105 lncRNA upstream 402647 20988324 ~ 20995540 (-) True tmie
XM_039815169.1 mRNA downstream 22223 20533111 ~ 20558297 (-) True cables1
XM_039815171.1 mRNA downstream 22224 20533111 ~ 20558296 (-) False cables1
XM_039816478.1 mRNA downstream 124642 20442590 ~ 20455878 (-) False mmp16b
XM_039816477.1 mRNA downstream 124644 20438467 ~ 20455876 (-) True mmp16b
XM_039816480.1 mRNA downstream 125079 20442590 ~ 20455441 (-) False mmp16b
XM_039816534.1 mRNA upstream 3107 20588784 ~ 20595162 (-) False gata6
XM_039816535.1 mRNA upstream 3107 20588784 ~ 20594647 (-) False gata6
XM_039816533.1 mRNA upstream 3107 20588784 ~ 20594643 (-) True gata6
XM_039815050.1 mRNA upstream 34611 20620288 ~ 20675826 (-) False mib1
XM_039815049.1 mRNA upstream 34611 20620288 ~ 20675825 (-) False mib1
TU156767 other downstream 784811 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 1115140 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 1357794 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1645043 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1734243 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 422372 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 1676321 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 1677446 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 2844689 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 2882943 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile