RNA id: XR_005640787.1


Basic Information

Item Value
RNA id XR_005640787.1
length 1368
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120568801
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29508648 ~ 29510797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgggtCACCCTACTGTGTGGGCTTGTgtagccagctagctaacgttagcaaacacATTAGCTAAGCTTACTCCTGCTAGCGCGAGTGGGTGGCTGTGTGCTTGTGTAGCCAGCTAgccagctaatgttagcaaacacaTTTGCTCCACTTACTCCTGCTGGCACCCAAGATTTGATAtattttgcgtgtgtgtgatgtgtgttgatCTTTTATTCGTGTAAGTCGAAAATCTATCAGTACTACCCACTAGCTAACTAGCCCCATTCACTCGCTCATTTTGTGTGTCAATACGCAGTATCTGTCTTTTTtggagagctagctagctagatagttACCTAATTTTAACAGAATTTAATCGTTTTTGTCCATTGCTAGGTTCCACTAGAGATAACGACACTACAGGCTGTTTGAAAGACAACACCGACTCAGATGTTGAAGCACAGATTTCCCTGCCTAGCACTCCGAGGCTAATCATGCTTGGAGGCAGCCACGTCCCTTGAATTTGTCCAACGcttttttgTCCAGATAAATCCAGAACGGAGTAAATGTGCTGCTAAATTCCAGACCAGCAAGAGCACGGGAAAGAAGGTTCAACGGAAAAATCAGTCCCTGAATCAACATGTCGCCGCTCTAATCCAGGACTTCATTGAATATGACTGGCAGAATACCTAGAGCAGGCCAGTAAAGAAGACGTCCACTCCACTCAGGCTCCATtttcatacacacagacacacacacacacacacacacacacacacacacacacacacacacacactgatagaTGCTGGGGTGAAGTTATTGTTCTTGTGGTAGGACTTCACTACAACATATGcgcacattctctctctctctctctctctctctctctctctctctatgtctctttctctctctctctctctcacacacacacacacacacacacacacacacacaaaccggtTGGGTTTTGTTTACAAACTACACATTgactctcttacacacactcaTGCGCACACATGTATTTGCCCACATGGATTCTCTATCCCTTCCTCTCTGACTAGCACATCACACATGTACACGCACAGAGacatggacacaaacacacacactactctgtcacacatgcatgttctctctctacctccctcGCACACACTTCTGTCTAACTACAACATGCTCCTCTCTCTCATATCTTTCCGATATGTTGGGTTTTACTGTTGGTTTTTACTAATACTAGTAGAGTATGATACATTGATAGACCATGCTTTTCATATATATGTCTATGTGTCATATCCTGTATATCTGAGAATGTGAACGCTTGGATGAAGTTTTACCGTTTGTTTTTATGAATTCTAATAGTTGAATAAAGTTTTTAAACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160186 lncRNA downstream 14741 29493304 ~ 29493907 (-) True G118863
TU160173 lncRNA downstream 101263 29407085 ~ 29407385 (-) True G118851
TU160118 lncRNA downstream 330890 29177482 ~ 29177758 (-) True G118798
TU160115 lncRNA downstream 332133 29175934 ~ 29176515 (-) True G118795
TU160098 lncRNA downstream 363367 29064681 ~ 29145281 (-) True G118783
TU160238 lncRNA upstream 115916 29626659 ~ 29626861 (-) True G118905
TU160239 lncRNA upstream 116649 29627392 ~ 29627720 (-) True G118906
TU160274 lncRNA upstream 241098 29751841 ~ 29752060 (-) True G118933
XR_005640609.1 lncRNA upstream 271364 29782107 ~ 29796905 (-) True LOC120567751
TU160282 lncRNA upstream 327468 29838211 ~ 29838620 (-) True G118940
XM_039816391.1 mRNA downstream 216008 29287276 ~ 29292640 (-) True LOC120568712
XM_039816392.1 mRNA downstream 218084 29287276 ~ 29290564 (-) False LOC120568712
XM_039816556.1 mRNA downstream 404855 29101010 ~ 29103793 (-) True LOC120568834
XM_039815383.1 mRNA downstream 632046 28874875 ~ 28876602 (-) True LOC120568118
XM_039814984.1 mRNA downstream 847499 28659832 ~ 28661149 (-) True LOC120567913
XM_039814653.1 mRNA upstream 42716 29553459 ~ 29586063 (-) True si:ch211-153l6.6
XM_039814721.1 mRNA upstream 125360 29636103 ~ 29649692 (-) False LOC120567741
XM_039814720.1 mRNA upstream 125360 29636103 ~ 29649692 (-) False LOC120567741
XM_039814718.1 mRNA upstream 125360 29636103 ~ 29649692 (-) False LOC120567741
XM_039814716.1 mRNA upstream 125360 29636103 ~ 29649692 (-) True LOC120567741
TU160179 other downstream 87996 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 522329 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 1789889 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 1794258 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 1833288 27670976 ~ 27675360 (-) False LOC120568986
TU160248 other upstream 133620 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 1353503 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 1353503 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 1615687 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 1659179 31169922 ~ 31171610 (-) True G119169

Expression Profile