RNA id: XR_005640791.1


Basic Information

Item Value
RNA id XR_005640791.1
length 1694
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120568809
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34768101 ~ 34771677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTGCTAGACTGCGTAGTGCATTTCCAAAAACGATTTTTTGAGAAGTGATCAAATCTGCACTTACTTCAAGACCATACCTAGGATGCATTGAGCATACACTTGCGaCCGGCCTTTTTCAGCCACTGGTAGACTGTTAATATTGGTCTTTGGTCGGTACATGCCATGCAGCACCCAGCCTGTTGTCATCCTGGTCTGAGCCACTATATGGCACTGTGGTAAAGAAGAAGCTACAGCATGATTTCTTGGCTCGGGAGACAAGGATTCGAATCCTGATCAACCCTATTGAGCAGCTCTATCAGCTACACCATAGAAGTTATAATACAAGttagaagaagaggagggaggtggTTACCTTCAACCCTCAGGGACACAGCAAGGACAACCAACAACATTTCTGGAATTTGCCAGGAGCTTCTGGGAAAATTAGGGACCTGAGGGAATATCTATCCTCGAGGAAGCCTGCGCCACCAGGGGCATCAGAGGGTGCCAATACTGTTGGTTTCGGAGCCAGGGCCAAGGACACCTGGAGGCAGATCTGGGAGAGCAGGGCTGATGGATATGCTTCCTTCATTTTAGGTTTAAAGTGTGTCAAAAACAGCAAGATGTACAACCTGCAGGAGTGCATCCTCCTGCCAACCACCTGCACGAGTCTTCACGACATTAGCTGCCTTCATCTAGCACTCTAGTGACGGAGGAGGGCGAGGAGCTGGAGAGAGGGCTGCTACATCTGTCTCCATCTAAATTTGACACTGATCTAAGTAGGTGGATTCTAGTGTTTTAAATCTTATCGCTCTTAACTCTGTTTATGTCTTATGTCACCTGTGCTTTCTGGGCCACCAGAGCGGCCCCTGGCTGTGTCTCCACAAACAGGTTTTTCTCCATCAGTGTAGGATTCTGTTCTCAGCAGAATTCACCTGCTATTACTGTTCTCCGTCAGCTAGTTTGTTATTTTGGCCATGTTCAGGCCTGTTCTGATGCTTGTGTTCTTTTACTCTCCCACTAATTTAAGGAATTAACATGTCACCGATGATGGTAagtgttttcttcttttgcaGGCTTTTTTTCAGGCTGTCATTCAAGGATTTGGCATGTGAGATTCCTATCTTGGATAGGTTCACTTGTCACATCTTTGACTGACAGGCAGTGTGCTTACTATATATTGATATTGTTTCCATGATTTACCTGTTTTCCTAAAGGCATTGTGTATTTCTCATACAAATGATTTGATTCATAATTTAAACAGGGTGTTTTCAGACTGTACTCTGTATATTGTACTGTAGTTAGAGAGACCGCAGGTAAAGACACATTgtgaaacataaacaaacttGACTGGGTGAAGAAAATGACACTGAATTGGTTTTACAGCACACAAGACGAAGCCAACAGCTACTGTTTCCAGACCTGCCAAGCCTGATCACCCCTCTGTGATTGTTGCTTCTGTTAAAGGTGATTCAATTCGCAAATGTTATGTGACCAAAATGTTCTTACAGACACGGCGAATGCCCCGCTGCCAGGCCATCGCCAGACAGCTCAGGATAGAAGGGCAGGCGCCCAATTTGTTGAGGATGTTGTCCTCCTATACTACCAGTGTACCTCACATATGTTTCAGTTTCATTCTGACAAATCCAATTCCAATTCCATTATtatttccatatatatatatatatatccttacAGATGCTGGTGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162009 lncRNA upstream 102887 34645692 ~ 34665214 (+) False pde4ca
TU162002 lncRNA upstream 149889 34617774 ~ 34618212 (+) True G120295
TU161997 lncRNA upstream 160345 34603860 ~ 34607756 (+) False pik3r2
TU161998 lncRNA upstream 199336 34568185 ~ 34568765 (+) True G120291
XR_005640613.1 lncRNA upstream 275724 34486215 ~ 34492377 (+) False LOC120567793
XR_005640792.1 lncRNA downstream 21081 34792758 ~ 34797847 (+) True LOC120568810
TU162120 lncRNA downstream 124858 34896535 ~ 34897133 (+) True G120391
TU162122 lncRNA downstream 133469 34905146 ~ 34905390 (+) True G120393
TU162125 lncRNA downstream 181648 34953325 ~ 34954407 (+) True LOC120568917
XR_005640805.1 lncRNA downstream 181864 34953541 ~ 34954407 (+) False LOC120568917
XM_039816513.1 mRNA upstream 1770 34743728 ~ 34766331 (+) True LOC120568807
XM_039816518.1 mRNA upstream 1770 34743728 ~ 34766331 (+) False LOC120568807
XM_039816516.1 mRNA upstream 1770 34743728 ~ 34766331 (+) False LOC120568807
XM_039816514.1 mRNA upstream 1770 34743728 ~ 34766331 (+) False LOC120568807
XM_039816517.1 mRNA upstream 1770 34743728 ~ 34766331 (+) False LOC120568807
XM_039816523.1 mRNA downstream 38215 34809892 ~ 34824821 (+) False LOC120568812
XM_039816521.1 mRNA downstream 44773 34816450 ~ 34824821 (+) True LOC120568812
XM_039816995.1 mRNA downstream 393981 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA downstream 394470 35166147 ~ 35168716 (+) True LOC120569116
XM_039814983.1 mRNA downstream 489881 35261558 ~ 35262902 (+) True LOC120567912
TU161934 other upstream 310490 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 364100 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 450335 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 602255 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 810597 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 397 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 473 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 4401 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 831711 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1456147 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile