RNA id: XR_005640803.1


Basic Information

Item Value
RNA id XR_005640803.1
length 647
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120568900
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25872329 ~ 25873402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGATAACAacacaactttaccagtctcaccagcagataacaacacaactttaccagtctcaccagcagattACAGCACAACTTTAGCTACAGCAGGGACAACACCGACAGACACCAGGACAACTCTGGATACCACTAGTGTCACATCTTCACCAGCAGATACCTATATAGTGGCCATTGACCTGAAAGCTTATGTATTATCCCAGAATGGGGAAAATGAAGATGTGATTTTTGAGGCTATCTCCAATTTTATTTCCCAGACCCTTCTCCAGCTGAACTGTGAGGGCTGCTCATCAACTATCAGACACATCAAACGCACCTGAGAAAGGCCAATGTCTCAGCCAACGGGAGCACCAGTGTGGCTGTAGCTGTACTGGGACAACAGGCTGCACAACTCTCAGAAACAACACCATTACTTTGAATTTCGGCATTCATTCCAACAGCCCTATCAGAGATATTAGGTCTACATGATTAATACATTTCTTATGTACCCTTTTAACATGTAAAATGATATGCAGTACTATAAAGCTCTATAACTAACTAAAGTTCTCACACAGGTATATTTTACAACTTAAAACCAGGGTgtgaactacgggggagctcggctccccttaataagacatgggctcccctgaaaatgtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158824 lncRNA upstream 41634 25829764 ~ 25830695 (+) False G117829
TU158810 lncRNA upstream 78375 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA upstream 79138 25782175 ~ 25793191 (+) True LOC120568901
TU158801 lncRNA upstream 122541 25749435 ~ 25749788 (+) False LOC120568894
XR_005640686.1 lncRNA upstream 741400 25125831 ~ 25130929 (+) True LOC120568228
TU158831 lncRNA downstream 7102 25880504 ~ 25888841 (+) True LOC120568898
XR_005640801.1 lncRNA downstream 7185 25880587 ~ 25888832 (+) False LOC120568898
TU158841 lncRNA downstream 31511 25904913 ~ 25905131 (+) True G117845
TU158842 lncRNA downstream 32713 25906115 ~ 25906316 (+) True G117846
TU158843 lncRNA downstream 43098 25916500 ~ 25916722 (+) True G117847
XM_039816643.1 mRNA upstream 61049 25808021 ~ 25811280 (+) True LOC120568896
XM_039816642.1 mRNA upstream 94652 25773777 ~ 25777677 (+) True LOC120568895
XM_039816641.1 mRNA upstream 98861 25743327 ~ 25773468 (+) True LOC120568894
XM_039815788.1 mRNA upstream 314697 25376185 ~ 25557632 (+) False LOC120568352
XM_039816728.1 mRNA downstream 58139 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 86404 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 95208 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 95208 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA downstream 95503 25968905 ~ 25972306 (+) False LOC120568964
TU158825 other upstream 41634 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 78375 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 116439 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 918082 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1196576 24667893 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 342325 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 522024 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 526018 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 543106 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 717428 26590830 ~ 26600072 (+) True prkab2

Expression Profile