RNA id: XR_005640813.1


Basic Information

Item Value
RNA id XR_005640813.1
length 339
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120568944
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2473964 ~ 2474785 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTCATACCAGAAAGTACACCACTAAAAGTCACAGATGAGCAAGGCATAGAGGTGGACGAGGATGTCTTTCCAGAACTTGCAACAGCCAaagaaatatgttttatcatcTACACTGAAAATGATGTTCCTGTCCTGCAGCGAGAAAGTGAAGGGCCTTCCTCTCCAAGTTTAACAGATACATTGTCAATCTCAAGCAGTCTAAGTAGCGACACAAGTGATGCTGGATTTCAAATGATTCAACCTGTCATGGAATTTACCCGTGCAAGAAATACTGTGGAGCAGATTCTCACTTCCAAGCCTGCAGGGATGACTGTGATCAAAGAGTATGAAGAGACT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149976 lncRNA upstream 38485 2415364 ~ 2435479 (+) True G111370
TU149978 lncRNA upstream 58648 2414102 ~ 2415316 (+) True G111371
TU149970 lncRNA upstream 134545 2338391 ~ 2339419 (+) True G111368
TU149957 lncRNA upstream 213548 2260139 ~ 2260416 (+) True G111357
TU149955 lncRNA upstream 227763 2245881 ~ 2246201 (+) True G111355
TU149999 lncRNA downstream 27108 2501893 ~ 2554775 (+) True G111389
TU150002 lncRNA downstream 39369 2514154 ~ 2519456 (+) True G111392
TU150012 lncRNA downstream 80606 2555391 ~ 2556012 (+) True G111401
TU150028 lncRNA downstream 90350 2565135 ~ 2625329 (+) False G111404
TU150032 lncRNA downstream 90901 2565686 ~ 2618703 (+) False G111404
XM_039816090.1 mRNA upstream 9124 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 236404 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 315399 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 465084 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 538187 1924151 ~ 1935777 (+) True LOC120567896
XM_039816589.1 mRNA downstream 191039 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 257821 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 275069 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 312994 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 824079 3298864 ~ 3304226 (+) True ptmab
unassigned_transcript_508 other upstream 33621 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other upstream 33766 2439736 ~ 2440198 (+) False LOC120568516
unassigned_transcript_507 other upstream 174084 2282608 ~ 2299880 (+) True LOC120568515
TU149958 other upstream 202037 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_506 other upstream 252073 2221448 ~ 2221891 (+) True LOC120567899
TU150017 other downstream 97403 2572188 ~ 2636043 (+) True G111404
TU149996 other downstream 102336 2577121 ~ 2577931 (+) True G111388
TU150031 other downstream 140792 2615577 ~ 2636043 (+) False G111404
TU150110 other downstream 342159 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 463364 2938149 ~ 2940848 (+) True G111486

Expression Profile