RNA id: XR_005640829.1


Basic Information

Item Value
RNA id XR_005640829.1
length 279
lncRNA type intronic
GC content 0.49
exon number 3
gene id LOC120569032
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 10837503 ~ 10839103 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTGGAGACTTTACTAAACAACTTAAAAGAACGAGTAAGTGGGTAGGACGTGACGTCATTTCCTAACGGTTCTGGCTCAGAGAGCCGACACCAGGGATGTGGCATGGCGGGCTCAGCTACTCCACGGTCTTACTGGACTCCACCGACAATACCTCAAatggaaaacagcagaaaaagaaaatatgagAGAAACTGGAGCGACAGGAAGgcgtgtgtgagaaagaggggAGGACACCAGCGAAGGACAGCAGGCCATATTTGAACTTAGGTCACAgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152954 lncRNA upstream 994020 9842701 ~ 9843483 (+) True G113446
TU152934 lncRNA upstream 1023261 9811980 ~ 9814242 (+) True G113429
TU152803 lncRNA upstream 1134853 9690488 ~ 9702650 (+) True G113338
TU152798 lncRNA upstream 1153765 9673705 ~ 9683738 (+) True G113337
TU152800 lncRNA upstream 1155875 9673705 ~ 9681628 (+) False G113337
XR_005640827.1 lncRNA downstream 1414 10840517 ~ 10843220 (+) True LOC120569030
TU153001 lncRNA downstream 47889 10886992 ~ 10887667 (+) True G113492
TU153008 lncRNA downstream 87353 10926456 ~ 10928243 (+) True G113498
TU153095 lncRNA downstream 207453 11046556 ~ 11055806 (+) False LOC120567863
XR_005640624.1 lncRNA downstream 207462 11046565 ~ 11055801 (+) True LOC120567863
XM_039816835.1 mRNA upstream 83249 10298707 ~ 10754254 (+) True astn1
XM_039816836.1 mRNA upstream 83249 10298707 ~ 10754254 (+) False astn1
XM_039816838.1 mRNA upstream 83249 10298707 ~ 10754254 (+) False astn1
XM_039816374.1 mRNA upstream 996725 9826159 ~ 9840778 (+) True klhl20
XM_039816375.1 mRNA upstream 996725 9827219 ~ 9840778 (+) False klhl20
XM_039816840.1 mRNA downstream 28939 10868042 ~ 10881652 (+) True cop1
XM_039814635.1 mRNA downstream 53274 10892377 ~ 10917505 (+) False xrn1
XM_039814634.1 mRNA downstream 54233 10893336 ~ 10917505 (+) True xrn1
XM_039814633.1 mRNA downstream 54242 10893345 ~ 10917505 (+) False xrn1
XM_039814941.1 mRNA downstream 238129 11077232 ~ 11078874 (+) True LOC120567859
unassigned_transcript_555 other upstream 1295373 9542059 ~ 9542130 (+) True trnaq-cug_12
unassigned_transcript_554 other upstream 1296291 9541141 ~ 9541212 (+) True trnaq-cug_11
unassigned_transcript_553 other upstream 1297552 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_552 other upstream 1298301 9539131 ~ 9539202 (+) True trnaq-cug_9
unassigned_transcript_551 other upstream 1298756 9538676 ~ 9538747 (+) True trnaq-cug_8
TU153003 other downstream 46492 10885595 ~ 10886182 (+) False LOC120568835
unassigned_transcript_556 other downstream 46497 10885600 ~ 10886478 (+) True LOC120568835
TU153118 other downstream 493494 11332597 ~ 11343691 (+) False pkia
TU153339 other downstream 1318348 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other downstream 1318413 12157516 ~ 12160255 (+) False LOC120568189

Expression Profile