RNA id: XR_005640842.1



Basic Information


Item Value
RNA id XR_005640842.1
length 186
RNA type snoRNA
GC content 0.49
exon number 1
gene id LOC120569139
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15411162 ~ 15411347 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCTTCTCTCTAAAGCACCCTGCTGAAACTGCAGGAGCCAAACCTCACAGGTTTAGCTCATGTGGCCGTGTAAGCATGGGTACACCAGGGAAGGAGATTAAAATACACAGTATCGGAAATGAGGCTTGGGGGGGACCTCTTTCTTAATGTCCAGTGTCCTTCGTCTCAAGATCCTGTGTTACATGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154969 lncRNA downstream 3535 15407377 ~ 15407627 (-) True G114883
XR_005640790.1 lncRNA downstream 17903 15387478 ~ 15393259 (-) True LOC120568803
TU154900 lncRNA downstream 144938 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 329182 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 408117 15001144 ~ 15003045 (-) True G114733
TU155136 lncRNA upstream 309672 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 323707 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 324133 15735480 ~ 15735895 (-) True G115042
TU155171 lncRNA upstream 325182 15736529 ~ 15736827 (-) True G115043
TU155176 lncRNA upstream 330477 15741824 ~ 15745228 (-) True G115048
XM_039816037.1 mRNA downstream 80198 15329264 ~ 15330964 (-) True LOC120568473
XM_039816035.1 mRNA downstream 83100 15311382 ~ 15328062 (-) False LOC120568471
XM_039816033.1 mRNA downstream 83100 15311382 ~ 15328062 (-) True LOC120568471
XM_039816036.1 mRNA downstream 83535 15311382 ~ 15327627 (-) False LOC120568471
XM_039816034.1 mRNA downstream 83535 15311382 ~ 15327627 (-) False LOC120568471
XM_039816567.1 mRNA upstream 5678 15417025 ~ 15418189 (-) True setd9
XM_039816775.1 mRNA upstream 33125 15444472 ~ 15451865 (-) True LOC120568994
XM_039816424.1 mRNA upstream 41092 15452439 ~ 15462599 (-) False LOC120568743
XM_039816423.1 mRNA upstream 41092 15452439 ~ 15462599 (-) True LOC120568743
XM_039816203.1 mRNA upstream 72843 15484190 ~ 15518928 (-) True LOC120568593
XR_005640598.1 other downstream 106552 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other downstream 106552 15290186 ~ 15304610 (-) False mfsd8l2
TU154687 other downstream 614118 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 795390 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2322599 13084561 ~ 13088563 (-) True G114152
XR_005640843.1 other upstream 316 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 1046 15412393 ~ 15412467 (-) True LOC120569142
XR_005640845.1 other upstream 1639 15412986 ~ 15413059 (-) True LOC120569143
TU155326 other upstream 732813 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 771307 16182654 ~ 16201698 (-) True cc2d1b

Expression Profile