RNA id: unassigned_transcript_491


Basic Information

Item Value
RNA id unassigned_transcript_491
length 398
RNA type V_gene_segment
GC content 0.42
exon number 3
gene id LOC120568493
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1666768 ~ 1674023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaaccatcaacattacctttattcaacatgctgtcactgcagcattgtgtgttttatCTGATGCTTCTCTCCATCCTCACAGGTGTCAGCTGTGATGAACTCACTCCAGttgagacagaaaagaaaagtttagaaggcagctctgttactctgtcctacagatactcCAAACAAGCTAAATATGAtgattatttcttctggtatcgacattatccaggaaaaccaccagaTTTTCTCATCTTTCACTCTGTAACGCAAGATGAAACAAAGTCTGGACTGTCTGTTTCTatctcctctgctgcagtgtctgactctgctgtgtactactgtgctgtgaggcccacagtgacaggaaacccACAGTCTCTGTACACAAAACCTTTAGAACAAAGataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149651 lncRNA upstream 69189 1592782 ~ 1597579 (+) True G111125
TU149649 lncRNA upstream 85664 1580643 ~ 1581104 (+) False LOC120568490
TU149625 lncRNA upstream 197745 1411929 ~ 1469023 (+) False G111101
TU149623 lncRNA upstream 250203 1411929 ~ 1416565 (+) True G111101
TU149613 lncRNA upstream 275094 1391280 ~ 1391674 (+) True G111096
TU149847 lncRNA downstream 35299 1709322 ~ 1926604 (+) False LOC120567896
XR_005640629.1 lncRNA downstream 92472 1766495 ~ 1767066 (+) True LOC120567895
XR_005640628.1 lncRNA downstream 172473 1846496 ~ 1853159 (+) True LOC120567894
TU149889 lncRNA downstream 289685 1963708 ~ 1963929 (+) True G111296
TU149890 lncRNA downstream 294384 1968407 ~ 1968625 (+) True G111297
XM_039816703.1 mRNA upstream 324417 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 378969 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 452292 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 466187 1152120 ~ 1200581 (+) True wdr33
XM_039816047.1 mRNA upstream 574005 1070547 ~ 1092763 (+) True cdyl
XM_039816053.1 mRNA downstream 1719 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 215100 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 224032 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 250128 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 332777 2006800 ~ 2008880 (+) False LOC120568507
unassigned_transcript_490 other upstream 30275 1635965 ~ 1636493 (+) True LOC120567874
unassigned_transcript_489 other upstream 53894 1612260 ~ 1612874 (+) True LOC120567876
unassigned_transcript_488 other upstream 55584 1610700 ~ 1611184 (+) True LOC120567878
unassigned_transcript_487 other upstream 62315 1602896 ~ 1604453 (+) True LOC120568491
unassigned_transcript_486 other upstream 84084 1580627 ~ 1582684 (+) True LOC120568490
unassigned_transcript_492 other downstream 47436 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_499 other downstream 183136 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_500 other downstream 196162 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_501 other downstream 205715 1879738 ~ 1880285 (+) True LOC120567888
TU149900 other downstream 334321 2008344 ~ 2015872 (+) True LOC120568507

Expression Profile