RNA id: unassigned_transcript_492


Basic Information

Item Value
RNA id unassigned_transcript_492
length 446
RNA type V_gene_segment
GC content 0.44
exon number 3
gene id LOC120568495
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1721459 ~ 1722291 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttcctctctctcctcccctctcactGCAGACATGAAACACTGGCTGACTAACATCCTGATTCTGACTCTCTGGCTAGAGTGTAAGGGAGAAGACAGAGTGATCCAGTCAACAGGAGATGTCATTGCTACTGAAGGAGAGACAGTTACTCTTGACTGTACATTTGAGACAACTGCTTCCTATTCTTATCTGTTCTGGTACAAACAAGAAGTCAATGATTTCCCAAGGTACATGCTTAAGCGTTTCTCAAACACAGAAGAGAATGCTCCACAGTTCCAGAAAGACAGATTTGATGCTACAATCAACAAGACATCAGTTCCTCTGAAGATCCAGAAGCTACAGCtatctgactctgctgtgtactactgtgctctgcagcccacagtgacaggaaacaccaaaactctgtacaaaaacctttgggGTATGTTAGACTATGCAgcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149632 lncRNA upstream 45514 1451874 ~ 1675945 (+) False LOC120568494
TU149651 lncRNA upstream 123880 1592782 ~ 1597579 (+) True G111125
TU149649 lncRNA upstream 140355 1580643 ~ 1581104 (+) False LOC120568490
TU149625 lncRNA upstream 252436 1411929 ~ 1469023 (+) False G111101
TU149623 lncRNA upstream 304894 1411929 ~ 1416565 (+) True G111101
XR_005640629.1 lncRNA downstream 44204 1766495 ~ 1767066 (+) True LOC120567895
XR_005640628.1 lncRNA downstream 124205 1846496 ~ 1853159 (+) True LOC120567894
TU149889 lncRNA downstream 241417 1963708 ~ 1963929 (+) True G111296
TU149890 lncRNA downstream 246116 1968407 ~ 1968625 (+) True G111297
TU149896 lncRNA downstream 261650 1983941 ~ 1984348 (+) True G111303
XM_039816053.1 mRNA upstream 38173 1675742 ~ 1683286 (+) True LOC120568494
XM_039816703.1 mRNA upstream 379108 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 433660 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 506983 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 520878 1152120 ~ 1200581 (+) True wdr33
XM_039816058.1 mRNA downstream 166832 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 175764 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 201860 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 284509 2006800 ~ 2008880 (+) False LOC120568507
XM_039816087.1 mRNA downstream 432644 2154935 ~ 2158565 (+) True LOC120568513
unassigned_transcript_491 other upstream 47436 1666768 ~ 1674023 (+) True LOC120568493
unassigned_transcript_490 other upstream 84966 1635965 ~ 1636493 (+) True LOC120567874
unassigned_transcript_489 other upstream 108585 1612260 ~ 1612874 (+) True LOC120567876
unassigned_transcript_488 other upstream 110275 1610700 ~ 1611184 (+) True LOC120567878
unassigned_transcript_487 other upstream 117006 1602896 ~ 1604453 (+) True LOC120568491
unassigned_transcript_499 other downstream 134868 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_500 other downstream 147894 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_501 other downstream 157447 1879738 ~ 1880285 (+) True LOC120567888
TU149900 other downstream 286053 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_502 other downstream 322429 2044720 ~ 2049498 (+) True LOC120568512

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU19024 True 218 lncRNA 0.60 1 NC_048565.1 17362332 ~ 17362549 (-)
eurasian perch (Perca fluviatilis) TU19024 True 253 lncRNA 0.40 2 NC_053113.1 4737226 ~ 4762902 (+)
striped catfish (Pangasianodon hypophthalmus) LOC117596944 True 490 V_segment 0.42 2 NC_047598.1 32880711 ~ 32881365 (+)
tiger barb (Puntius tetrazona) TU19024 False 494 TUCP 0.41 2 NC_056700.1 16920010 ~ 16920663 (-)