RNA id: unassigned_transcript_499


Basic Information

Item Value
RNA id unassigned_transcript_499
length 413
RNA type V_gene_segment
GC content 0.45
exon number 2
gene id LOC120567893
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1857159 ~ 1857661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGAGAGATCACAGCCTTCTTTATACTTGCTGTAGCTCAGAGTTACTCCACACTGCAGATATGAAGCCTCTGTTCATCTCAGTGTTGCTGGCTGCTATGAGCCTTGAATGCGGAGCACAAAAAGACAACGTGCTGCAACCAGAAGGAGATGTGACTGCTACTGAAGGAGAGGCAGTAACACTTGGCTGTCAATATAACAGCAGTTCACCTTCTAACTATCTCTTCTGGTACAAACAGGATGGAAACAACAGCCCCAAATTCATTCTCAGCCGCGTTCAAGGGGATGAAGGGAACACACCAGATGAGTTCAAGGATAGATTTTCatctacacacaattccaagTTAAGATCAGTTCCTCTGATGATCCAGAAGAttcagctgtctgactctgctgtgtactactgtgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640628.1 lncRNA upstream 4000 1846496 ~ 1853159 (+) True LOC120567894
XR_005640629.1 lncRNA upstream 90093 1766495 ~ 1767066 (+) True LOC120567895
TU149632 lncRNA upstream 181214 1451874 ~ 1675945 (+) False LOC120568494
TU149651 lncRNA upstream 259580 1592782 ~ 1597579 (+) True G111125
TU149649 lncRNA upstream 276055 1580643 ~ 1581104 (+) False LOC120568490
TU149889 lncRNA downstream 106047 1963708 ~ 1963929 (+) True G111296
TU149890 lncRNA downstream 110746 1968407 ~ 1968625 (+) True G111297
TU149896 lncRNA downstream 126280 1983941 ~ 1984348 (+) True G111303
TU149898 lncRNA downstream 129877 1987538 ~ 1988133 (+) True G111305
TU149927 lncRNA downstream 371076 2228737 ~ 2229234 (+) True G111332
XM_039816053.1 mRNA upstream 173873 1675742 ~ 1683286 (+) True LOC120568494
XM_039816703.1 mRNA upstream 514808 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 569360 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 642683 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 656578 1152120 ~ 1200581 (+) True wdr33
XM_039816058.1 mRNA downstream 31462 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 40394 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 66490 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 149139 2006800 ~ 2008880 (+) False LOC120568507
XM_039816087.1 mRNA downstream 297274 2154935 ~ 2158565 (+) True LOC120568513
unassigned_transcript_492 other upstream 134868 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_491 other upstream 183136 1666768 ~ 1674023 (+) True LOC120568493
unassigned_transcript_490 other upstream 220666 1635965 ~ 1636493 (+) True LOC120567874
unassigned_transcript_489 other upstream 244285 1612260 ~ 1612874 (+) True LOC120567876
unassigned_transcript_488 other upstream 245975 1610700 ~ 1611184 (+) True LOC120567878
unassigned_transcript_500 other downstream 12524 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_501 other downstream 22077 1879738 ~ 1880285 (+) True LOC120567888
TU149900 other downstream 150683 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_502 other downstream 187059 2044720 ~ 2049498 (+) True LOC120568512
unassigned_transcript_503 other downstream 232568 2090229 ~ 2090739 (+) True LOC120567898

Expression Profile