RNA id: unassigned_transcript_500


Basic Information

Item Value
RNA id unassigned_transcript_500
length 413
RNA type V_gene_segment
GC content 0.44
exon number 2
gene id LOC120567891
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1870185 ~ 1870674 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGAGAGATCACAGCCTTCTTTATACTTGCTGTAGCTCAGAGTTACTCCACACTGCAGATATGAAGCCTCTGTTCATCTCAGTGTTGCTGGCTGCTATGAGCCTTGAATGCAGAGCACAAAAAGACAACGTGCTGCAACCAGAAGGAGATGTGACTGCTACTGAAGGAGAGGCAGTAACACTTGGCTGTCAATATAACAGCAGTTCAACTAATGATTATCTCTTCTGGTACAAACAGGATGGAAACAACAGCCCCAAATTCATTCTGATGCGCATTCAAGGGGATGAAGGGAACATAGCAGACAAGTTCAAGGATAGATTTTCatctacacacaattccaagTTAAGATCAGTTCCTCtgaagatccagaagcttcagctgtctgactctgctgtgtactactgtgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640628.1 lncRNA upstream 17026 1846496 ~ 1853159 (+) True LOC120567894
XR_005640629.1 lncRNA upstream 103119 1766495 ~ 1767066 (+) True LOC120567895
TU149632 lncRNA upstream 194240 1451874 ~ 1675945 (+) False LOC120568494
TU149651 lncRNA upstream 272606 1592782 ~ 1597579 (+) True G111125
TU149649 lncRNA upstream 289081 1580643 ~ 1581104 (+) False LOC120568490
TU149889 lncRNA downstream 93034 1963708 ~ 1963929 (+) True G111296
TU149890 lncRNA downstream 97733 1968407 ~ 1968625 (+) True G111297
TU149896 lncRNA downstream 113267 1983941 ~ 1984348 (+) True G111303
TU149898 lncRNA downstream 116864 1987538 ~ 1988133 (+) True G111305
TU149927 lncRNA downstream 358063 2228737 ~ 2229234 (+) True G111332
XM_039816053.1 mRNA upstream 186899 1675742 ~ 1683286 (+) True LOC120568494
XM_039816703.1 mRNA upstream 527834 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 582386 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 655709 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 669604 1152120 ~ 1200581 (+) True wdr33
XM_039816058.1 mRNA downstream 18449 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 27381 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 53477 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 136126 2006800 ~ 2008880 (+) False LOC120568507
XM_039816087.1 mRNA downstream 284261 2154935 ~ 2158565 (+) True LOC120568513
unassigned_transcript_499 other upstream 12524 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_492 other upstream 147894 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_491 other upstream 196162 1666768 ~ 1674023 (+) True LOC120568493
unassigned_transcript_490 other upstream 233692 1635965 ~ 1636493 (+) True LOC120567874
unassigned_transcript_489 other upstream 257311 1612260 ~ 1612874 (+) True LOC120567876
unassigned_transcript_501 other downstream 9064 1879738 ~ 1880285 (+) True LOC120567888
TU149900 other downstream 137670 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_502 other downstream 174046 2044720 ~ 2049498 (+) True LOC120568512
unassigned_transcript_503 other downstream 219555 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_504 other downstream 288122 2158796 ~ 2161477 (+) True LOC120567901

Expression Profile