RNA id: unassigned_transcript_504


Basic Information

Item Value
RNA id unassigned_transcript_504
length 399
RNA type V_gene_segment
GC content 0.42
exon number 4
gene id LOC120567901
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2158796 ~ 2161477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccatcaacattacctttattcaacatgctgtcaaTGCAGCATTGTGGGTTTTCTCTGCTATTTCTTTCCATTCTAACAGGTATCAGCTGTCAAGAACTAACTCCAATCCAGAAAGAAGAGAACAGTGtagaaggcagctctgttactctgtcctacaaATACTCCAAACAAGCAACTAGTAGTGATTACTTCTTCTGGTATCGACAATATCCTGGAAAACCACCAGAGTTCATCATCTCTCAttctgcctcacagcaagaagGAGGAATATTGACAAGTGCAATCGCTGGACTGAAGATTAAAGTGGAGGACAAACAAATCCATATGAATATCTCCTCAGCTAAGGTGTCtaactctgctgtgtactactgtgctgtgaagcccacagtgacaggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149898 lncRNA upstream 170663 1987538 ~ 1988133 (+) True G111305
TU149896 lncRNA upstream 174448 1983941 ~ 1984348 (+) True G111303
TU149890 lncRNA upstream 190171 1968407 ~ 1968625 (+) True G111297
TU149889 lncRNA upstream 194867 1963708 ~ 1963929 (+) True G111296
XR_005640628.1 lncRNA upstream 305637 1846496 ~ 1853159 (+) True LOC120567894
TU149927 lncRNA downstream 67260 2228737 ~ 2229234 (+) True G111332
TU149930 lncRNA downstream 73450 2234927 ~ 2235354 (+) False LOC120568514
TU149953 lncRNA downstream 80416 2241893 ~ 2242215 (+) True G111353
TU149955 lncRNA downstream 84404 2245881 ~ 2246201 (+) True G111355
TU149957 lncRNA downstream 98662 2260139 ~ 2260416 (+) True G111357
XM_039816087.1 mRNA upstream 231 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 149916 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 223019 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 251998 1898055 ~ 1906798 (+) True LOC120568501
XM_039816058.1 mRNA upstream 268498 1889123 ~ 1890298 (+) True LOC120568500
XM_039816088.1 mRNA downstream 73344 2234821 ~ 2237560 (+) True LOC120568514
XM_039816090.1 mRNA downstream 302196 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 504347 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 571129 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 588377 2749854 ~ 2751572 (+) True LOC120568825
unassigned_transcript_503 other upstream 68057 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_502 other upstream 109298 2044720 ~ 2049498 (+) True LOC120568512
TU149900 other upstream 142924 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_501 other upstream 278511 1879738 ~ 1880285 (+) True LOC120567888
unassigned_transcript_500 other upstream 288122 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_505 other downstream 17632 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_506 other downstream 59971 2221448 ~ 2221891 (+) True LOC120567899
TU149958 other downstream 110162 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_507 other downstream 121131 2282608 ~ 2299880 (+) True LOC120568515
unassigned_transcript_508 other downstream 278232 2439709 ~ 2440343 (+) True LOC120568516

Expression Profile