RNA id: unassigned_transcript_506


Basic Information

Item Value
RNA id unassigned_transcript_506
length 354
RNA type V_gene_segment
GC content 0.45
exon number 2
gene id LOC120567899
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2221448 ~ 2221891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGCCTCTGGTCATCTCAGTGTTGCTGGCTGCTATGAGCCTTGAATGCAGAGCACAAAAAGACAACGTGCTGCAACCAGAAGGAGATGTGACTGCTACTGAAGGAGAGGCAGTAACACTTGGCTGTCAATATAACAGCagtgcaactaatgattatctCTTCTGGTACAAACAGGATGGAAACAACAGCCCCAAATTCATTCTGAGCCGCTTTCAAGGGAATGAAGGGAACACACCAGACGAGTTcaaggagagattttcatctacacacaattccaagTTAAGATCAGTTCCTCtgaagatccagaagcttcagctgtctgactctgctgtgtactaccaacacagtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149898 lncRNA upstream 233315 1987538 ~ 1988133 (+) True G111305
TU149896 lncRNA upstream 237100 1983941 ~ 1984348 (+) True G111303
TU149890 lncRNA upstream 252823 1968407 ~ 1968625 (+) True G111297
TU149889 lncRNA upstream 257519 1963708 ~ 1963929 (+) True G111296
XR_005640628.1 lncRNA upstream 368289 1846496 ~ 1853159 (+) True LOC120567894
TU149927 lncRNA downstream 6846 2228737 ~ 2229234 (+) True G111332
TU149930 lncRNA downstream 13036 2234927 ~ 2235354 (+) False LOC120568514
TU149953 lncRNA downstream 20002 2241893 ~ 2242215 (+) True G111353
TU149955 lncRNA downstream 23990 2245881 ~ 2246201 (+) True G111355
TU149957 lncRNA downstream 38248 2260139 ~ 2260416 (+) True G111357
XM_039816087.1 mRNA upstream 62883 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 212568 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 285671 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 314650 1898055 ~ 1906798 (+) True LOC120568501
XM_039816058.1 mRNA upstream 331150 1889123 ~ 1890298 (+) True LOC120568500
XM_039816088.1 mRNA downstream 12930 2234821 ~ 2237560 (+) True LOC120568514
XM_039816090.1 mRNA downstream 241782 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 443933 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 510715 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 527963 2749854 ~ 2751572 (+) True LOC120568825
unassigned_transcript_505 other upstream 41845 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_504 other upstream 59971 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_503 other upstream 130709 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_502 other upstream 171950 2044720 ~ 2049498 (+) True LOC120568512
TU149900 other upstream 205576 2008344 ~ 2015872 (+) True LOC120568507
TU149958 other downstream 49748 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_507 other downstream 60717 2282608 ~ 2299880 (+) True LOC120568515
unassigned_transcript_508 other downstream 217818 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other downstream 217845 2439736 ~ 2440198 (+) False LOC120568516
TU150017 other downstream 350297 2572188 ~ 2636043 (+) True G111404

Expression Profile