RNA id: unassigned_transcript_516



Basic Information


Item Value
RNA id unassigned_transcript_516
length 82
RNA type tRNA
GC content 0.54
exon number 1
gene id trnas-uga_4
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6212113 ~ 6212194 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTGTgatggccgagtggttaaggcgttGGACTTGAAATCCAATGGGGTTTCCCCTCGTAGGTTCAAACCCTACTCACAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151527 lncRNA downstream 95969 6113462 ~ 6116144 (-) True G112381
TU151530 lncRNA downstream 106296 6082641 ~ 6105817 (-) False G112383
TU151529 lncRNA downstream 106296 6104799 ~ 6105817 (-) True G112383
TU151484 lncRNA downstream 218340 5922747 ~ 5993773 (-) True G112352
TU151460 lncRNA downstream 420350 5774413 ~ 5791763 (-) True G112332
TU151626 lncRNA upstream 135141 6347335 ~ 6347853 (-) True G112453
TU151627 lncRNA upstream 135141 6347335 ~ 6347853 (-) False G112453
TU151638 lncRNA upstream 144604 6356798 ~ 6357990 (-) True G112460
TU151639 lncRNA upstream 145885 6358079 ~ 6359329 (-) True G112461
TU151640 lncRNA upstream 147278 6359472 ~ 6359952 (-) True G112462
XM_039815076.1 mRNA downstream 33227 6172281 ~ 6178886 (-) True LOC120567959
XM_039815074.1 mRNA downstream 33536 6175573 ~ 6178577 (-) True LOC120567958
XM_039815075.1 mRNA downstream 33536 6176732 ~ 6178577 (-) False LOC120567958
XM_039815073.1 mRNA downstream 43000 6165148 ~ 6169113 (-) True LOC120567957
XM_039816327.1 mRNA downstream 133276 6077151 ~ 6078837 (-) True LOC120568672
XM_039816825.1 mRNA upstream 44106 6256300 ~ 6283498 (-) True LOC120569024
XM_039816826.1 mRNA upstream 44106 6256300 ~ 6283497 (-) False LOC120569024
XM_039816827.1 mRNA upstream 44106 6256300 ~ 6283497 (-) False LOC120569024
XM_039816828.1 mRNA upstream 44106 6256300 ~ 6283496 (-) False LOC120569024
XM_039816824.1 mRNA upstream 71966 6284160 ~ 6299971 (-) True gtpbp4
unassigned_transcript_515 other downstream 488 6211544 ~ 6211625 (-) True trnas-uga_3
unassigned_transcript_514 other downstream 1627 6210410 ~ 6210486 (-) True trnas-uga_2
unassigned_transcript_513 other downstream 2200 6209832 ~ 6209913 (-) True trnas-cga_3
unassigned_transcript_512 other downstream 3542 6208490 ~ 6208571 (-) True trnas-cga_2
unassigned_transcript_511 other downstream 5706 6206326 ~ 6206407 (-) True trnas-cga_1
unassigned_transcript_517 other upstream 491 6212685 ~ 6212766 (-) True trnas-uga_5
unassigned_transcript_518 other upstream 857 6213051 ~ 6213132 (-) True trnas-cga_4
unassigned_transcript_519 other upstream 1425 6213619 ~ 6213697 (-) True trnas-uga_6
unassigned_transcript_520 other upstream 1992 6214186 ~ 6214266 (-) True trnas-uga_7
unassigned_transcript_521 other upstream 2561 6214755 ~ 6214837 (-) True trnas-uga_8