RNA id: unassigned_transcript_525



Basic Information


Item Value
RNA id unassigned_transcript_525
length 82
RNA type tRNA
GC content 0.50
exon number 1
gene id trnas-uga_12
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6217031 ~ 6217112 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTGTgatggccgagtggttaaggtgtTGGACTTGAAATCCAATGGGGTTTCCCATTGTAGGTTCAAACCCTACTCACAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151527 lncRNA downstream 100887 6113462 ~ 6116144 (-) True G112381
TU151530 lncRNA downstream 111214 6082641 ~ 6105817 (-) False G112383
TU151529 lncRNA downstream 111214 6104799 ~ 6105817 (-) True G112383
TU151484 lncRNA downstream 223258 5922747 ~ 5993773 (-) True G112352
TU151460 lncRNA downstream 425268 5774413 ~ 5791763 (-) True G112332
TU151626 lncRNA upstream 130223 6347335 ~ 6347853 (-) True G112453
TU151627 lncRNA upstream 130223 6347335 ~ 6347853 (-) False G112453
TU151638 lncRNA upstream 139686 6356798 ~ 6357990 (-) True G112460
TU151639 lncRNA upstream 140967 6358079 ~ 6359329 (-) True G112461
TU151640 lncRNA upstream 142360 6359472 ~ 6359952 (-) True G112462
XM_039815076.1 mRNA downstream 38145 6172281 ~ 6178886 (-) True LOC120567959
XM_039815074.1 mRNA downstream 38454 6175573 ~ 6178577 (-) True LOC120567958
XM_039815075.1 mRNA downstream 38454 6176732 ~ 6178577 (-) False LOC120567958
XM_039815073.1 mRNA downstream 47918 6165148 ~ 6169113 (-) True LOC120567957
XM_039816327.1 mRNA downstream 138194 6077151 ~ 6078837 (-) True LOC120568672
XM_039816825.1 mRNA upstream 39188 6256300 ~ 6283498 (-) True LOC120569024
XM_039816826.1 mRNA upstream 39188 6256300 ~ 6283497 (-) False LOC120569024
XM_039816827.1 mRNA upstream 39188 6256300 ~ 6283497 (-) False LOC120569024
XM_039816828.1 mRNA upstream 39188 6256300 ~ 6283496 (-) False LOC120569024
XM_039816824.1 mRNA upstream 67048 6284160 ~ 6299971 (-) True gtpbp4
unassigned_transcript_524 other downstream 491 6216459 ~ 6216540 (-) True trnas-uga_11
unassigned_transcript_523 other downstream 1053 6215897 ~ 6215978 (-) True trnas-uga_10
unassigned_transcript_522 other downstream 1625 6215325 ~ 6215406 (-) True trnas-uga_9
unassigned_transcript_521 other downstream 2194 6214755 ~ 6214837 (-) True trnas-uga_8
unassigned_transcript_520 other downstream 2765 6214186 ~ 6214266 (-) True trnas-uga_7
unassigned_transcript_526 other upstream 490 6217602 ~ 6217683 (-) True trnas-uga_13
unassigned_transcript_527 other upstream 1062 6218174 ~ 6218255 (-) True trnas-uga_14
unassigned_transcript_528 other upstream 1619 6218731 ~ 6218812 (-) True trnas-uga_15
unassigned_transcript_529 other upstream 2193 6219305 ~ 6219386 (-) True trnas-cga_5
unassigned_transcript_530 other upstream 2761 6219873 ~ 6219954 (-) True trnas-uga_16