RNA id: unassigned_transcript_530



Basic Information


Item Value
RNA id unassigned_transcript_530
length 82
RNA type tRNA
GC content 0.52
exon number 1
gene id trnas-uga_16
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6219873 ~ 6219954 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTGTGATGGCCGAGAGGTTAAGGTGTTGGCCTTGAAATCCAATGGGGTTTCCCCTCGTAGGTTCAAACCCTACTTACAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151527 lncRNA downstream 103729 6113462 ~ 6116144 (-) True G112381
TU151530 lncRNA downstream 114056 6082641 ~ 6105817 (-) False G112383
TU151529 lncRNA downstream 114056 6104799 ~ 6105817 (-) True G112383
TU151484 lncRNA downstream 226100 5922747 ~ 5993773 (-) True G112352
TU151460 lncRNA downstream 428110 5774413 ~ 5791763 (-) True G112332
TU151626 lncRNA upstream 127381 6347335 ~ 6347853 (-) True G112453
TU151627 lncRNA upstream 127381 6347335 ~ 6347853 (-) False G112453
TU151638 lncRNA upstream 136844 6356798 ~ 6357990 (-) True G112460
TU151639 lncRNA upstream 138125 6358079 ~ 6359329 (-) True G112461
TU151640 lncRNA upstream 139518 6359472 ~ 6359952 (-) True G112462
XM_039815076.1 mRNA downstream 40987 6172281 ~ 6178886 (-) True LOC120567959
XM_039815074.1 mRNA downstream 41296 6175573 ~ 6178577 (-) True LOC120567958
XM_039815075.1 mRNA downstream 41296 6176732 ~ 6178577 (-) False LOC120567958
XM_039815073.1 mRNA downstream 50760 6165148 ~ 6169113 (-) True LOC120567957
XM_039816327.1 mRNA downstream 141036 6077151 ~ 6078837 (-) True LOC120568672
XM_039816825.1 mRNA upstream 36346 6256300 ~ 6283498 (-) True LOC120569024
XM_039816826.1 mRNA upstream 36346 6256300 ~ 6283497 (-) False LOC120569024
XM_039816827.1 mRNA upstream 36346 6256300 ~ 6283497 (-) False LOC120569024
XM_039816828.1 mRNA upstream 36346 6256300 ~ 6283496 (-) False LOC120569024
XM_039816824.1 mRNA upstream 64206 6284160 ~ 6299971 (-) True gtpbp4
unassigned_transcript_529 other downstream 487 6219305 ~ 6219386 (-) True trnas-cga_5
unassigned_transcript_528 other downstream 1061 6218731 ~ 6218812 (-) True trnas-uga_15
unassigned_transcript_527 other downstream 1618 6218174 ~ 6218255 (-) True trnas-uga_14
unassigned_transcript_526 other downstream 2190 6217602 ~ 6217683 (-) True trnas-uga_13
unassigned_transcript_525 other downstream 2761 6217031 ~ 6217112 (-) True trnas-uga_12
unassigned_transcript_531 other upstream 499 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_532 other upstream 1062 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_533 other upstream 6711 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_534 other upstream 7749 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_537 other upstream 2267513 8487467 ~ 8487539 (-) True trnak-uuu_16