RNA id: unassigned_transcript_542


Basic Information

Item Value
RNA id unassigned_transcript_542
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnan-guu_1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8873972 ~ 8874045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTCTGTGGCGCAATTGGTTAGCGCGTTCGGCTGTTAACCGAAAGGATGGTGGTTCGAGCCCACCCAGGGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152458 lncRNA upstream 46523 8826367 ~ 8827449 (+) True G113092
TU152461 lncRNA upstream 46523 8826845 ~ 8827449 (+) False G113092
TU152462 lncRNA upstream 46563 8826845 ~ 8827409 (+) False G113092
TU152388 lncRNA upstream 78180 8789226 ~ 8795792 (+) False LOC120568415
TU152403 lncRNA upstream 101928 8771147 ~ 8772044 (+) True G113050
TU152520 lncRNA downstream 70432 8944477 ~ 9002568 (+) False G113130
TU152521 lncRNA downstream 81833 8955878 ~ 8957272 (+) True G113131
TU152523 lncRNA downstream 93244 8967289 ~ 8969787 (+) True LOC120568741
XR_005640770.1 lncRNA downstream 93425 8967470 ~ 8969848 (+) False LOC120568741
XR_005640769.1 lncRNA downstream 93425 8967470 ~ 8969197 (+) False LOC120568741
XM_039816628.1 mRNA upstream 48161 8812897 ~ 8825811 (+) True LOC120568881
XM_039815929.1 mRNA upstream 64513 8789209 ~ 8809459 (+) True LOC120568415
XM_039815930.1 mRNA upstream 64513 8795824 ~ 8809459 (+) False LOC120568415
XM_039816931.1 mRNA upstream 137867 8717869 ~ 8736105 (+) False fam151a
XM_039815905.1 mRNA downstream 21894 8895939 ~ 8900204 (+) False pdca
XM_039815904.1 mRNA downstream 21895 8895940 ~ 8900204 (+) False pdca
XM_039815906.1 mRNA downstream 23437 8897482 ~ 8902847 (+) True pdca
XM_039815902.1 mRNA downstream 30128 8904173 ~ 8920464 (+) False LOC120568389
XM_039814531.1 mRNA downstream 71057 8945102 ~ 8955712 (+) True LOC120567618
unassigned_transcript_541 other upstream 205 8873694 ~ 8873767 (+) True trnan-guu
unassigned_transcript_539 other upstream 1288 8872612 ~ 8872684 (+) True trnav-aac_1
TU152445 other upstream 56215 8813185 ~ 8817757 (+) False LOC120568881
TU152352 other upstream 158701 8713265 ~ 8715271 (+) False atg10
TU152347 other upstream 160975 8709329 ~ 8712997 (+) False atg10
unassigned_transcript_543 other downstream 260 8874305 ~ 8874378 (+) True trnan-guu_2
unassigned_transcript_544 other downstream 5234 8879279 ~ 8879353 (+) True trnan-guu_3
unassigned_transcript_545 other downstream 8669 8882714 ~ 8882787 (+) True trnan-guu_4
unassigned_transcript_546 other downstream 16241 8890286 ~ 8890359 (+) True trnan-guu_5
unassigned_transcript_548 other downstream 19937 8893982 ~ 8894056 (+) True trnan-guu_7