RNA id: unassigned_transcript_552


Basic Information

Item Value
RNA id unassigned_transcript_552
length 72
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaq-cug_9
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9539131 ~ 9539202 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152752 lncRNA upstream 69034 9469492 ~ 9470097 (+) True G113306
XR_005640716.1 lncRNA upstream 69811 9467298 ~ 9469320 (+) True LOC120568401
TU152730 lncRNA upstream 164026 9374449 ~ 9375105 (+) True G113290
TU152680 lncRNA upstream 269584 9269347 ~ 9269547 (+) True G113274
TU152679 lncRNA upstream 281548 9257323 ~ 9257583 (+) True G113273
TU152798 lncRNA downstream 134503 9673705 ~ 9683738 (+) True G113337
TU152800 lncRNA downstream 134503 9673705 ~ 9681628 (+) False G113337
TU152803 lncRNA downstream 151286 9690488 ~ 9702650 (+) True G113338
TU152934 lncRNA downstream 272778 9811980 ~ 9814242 (+) True G113429
TU152954 lncRNA downstream 303499 9842701 ~ 9843483 (+) True G113446
XM_039814851.1 mRNA upstream 5096 9523170 ~ 9534035 (+) True bpnt2
XM_039816672.1 mRNA upstream 17289 9511182 ~ 9521842 (+) True dars2
XM_039815909.1 mRNA upstream 112584 9359620 ~ 9426547 (+) True LOC120568395
XM_039816590.1 mRNA upstream 199513 9287153 ~ 9339618 (+) True tox
XM_039816877.1 mRNA upstream 282438 9235286 ~ 9256693 (+) True ca8
XM_039814853.1 mRNA downstream 3440 9542642 ~ 9551821 (+) False trnau1apb
XM_039814852.1 mRNA downstream 3442 9542644 ~ 9551821 (+) True trnau1apb
XM_039814848.1 mRNA downstream 27538 9566740 ~ 9581212 (+) True LOC120567806
XM_039814849.1 mRNA downstream 27553 9566755 ~ 9581212 (+) False LOC120567806
XM_039814850.1 mRNA downstream 27978 9567180 ~ 9581212 (+) False LOC120567806
unassigned_transcript_551 other upstream 384 9538676 ~ 9538747 (+) True trnaq-cug_8
unassigned_transcript_550 other upstream 980 9538080 ~ 9538151 (+) True trnaq-cug_7
TU152519 other upstream 536563 9001890 ~ 9002568 (+) True G113130
TU152498 other upstream 637524 8895927 ~ 8901607 (+) False pdca
unassigned_transcript_548 other upstream 645075 8893982 ~ 8894056 (+) True trnan-guu_7
unassigned_transcript_553 other downstream 678 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_554 other downstream 1939 9541141 ~ 9541212 (+) True trnaq-cug_11
unassigned_transcript_555 other downstream 2857 9542059 ~ 9542130 (+) True trnaq-cug_12
TU153003 other downstream 1346393 10885595 ~ 10886182 (+) False LOC120568835
unassigned_transcript_556 other downstream 1346398 10885600 ~ 10886478 (+) True LOC120568835