RNA id: unassigned_transcript_572


Basic Information

Item Value
RNA id unassigned_transcript_572
length 83
RNA type tRNA
GC content 0.54
exon number 1
gene id trnal-caa
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36229053 ~ 36229135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGgatggccgagtggttaaggcgttGCACTCAAGATGCAATGGACAGTTGTCCTCGTGGGTTCAAGTCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162439 lncRNA upstream 7283 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 22812 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 40495 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 338798 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 340168 35888646 ~ 35888885 (+) True G120611
TU162477 lncRNA downstream 175418 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 182609 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 590428 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 634658 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 634664 36863799 ~ 36866140 (+) True LOC120568212
XM_039816699.1 mRNA upstream 587020 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 785240 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 966151 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1060337 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 219902 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 219902 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 336626 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 359519 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 394942 36624077 ~ 36710812 (+) True LOC120568504
unassigned_transcript_571 other upstream 516 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_570 other upstream 1147 36227824 ~ 36227906 (+) True trnal-uaa_3
XR_005640811.1 other upstream 619694 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_569 other upstream 1452904 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 1456832 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_573 other downstream 5948 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 8632 36237767 ~ 36237849 (+) True trnal-uaa_6
unassigned_transcript_575 other downstream 9084 36238219 ~ 36238301 (+) True trnal-caa_1
unassigned_transcript_576 other downstream 9419 36238554 ~ 36238636 (+) True trnal-uaa_7
unassigned_transcript_577 other downstream 12266 36241401 ~ 36241483 (+) True trnal-caa_2