RNA id: unassigned_transcript_576


Basic Information

Item Value
RNA id unassigned_transcript_576
length 83
RNA type tRNA
GC content 0.54
exon number 1
gene id trnal-uaa_7
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36238554 ~ 36238636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGGCAAAAGCCCTCGTGGGTTCAAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162439 lncRNA upstream 16784 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 32313 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 49996 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 348299 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 349669 35888646 ~ 35888885 (+) True G120611
TU162477 lncRNA downstream 165917 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 173108 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 580927 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 625157 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 625163 36863799 ~ 36866140 (+) True LOC120568212
XM_039816699.1 mRNA upstream 596521 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 794741 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 975652 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1069838 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 210401 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 210401 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 327125 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 350018 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 385441 36624077 ~ 36710812 (+) True LOC120568504
unassigned_transcript_575 other upstream 253 36238219 ~ 36238301 (+) True trnal-caa_1
unassigned_transcript_574 other upstream 705 36237767 ~ 36237849 (+) True trnal-uaa_6
unassigned_transcript_573 other upstream 3401 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_572 other upstream 9419 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_571 other upstream 10017 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_577 other downstream 2765 36241401 ~ 36241483 (+) True trnal-caa_2
unassigned_transcript_578 other downstream 3100 36241736 ~ 36241818 (+) True trnal-uaa_8
unassigned_transcript_579 other downstream 3551 36242187 ~ 36242269 (+) True trnal-caa_3
unassigned_transcript_580 other downstream 3886 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_581 other downstream 10809 36249445 ~ 36249527 (+) True trnal-caa_4