RNA id: unassigned_transcript_577


Basic Information

Item Value
RNA id unassigned_transcript_577
length 83
RNA type tRNA
GC content 0.53
exon number 1
gene id trnal-caa_2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36241401 ~ 36241483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGGATGGCCGAGTGTTTAAGGCGTTGCACTCAAGATGCATTGGACGTTTGTCCTCGTGGGTTCAAGTCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162439 lncRNA upstream 19631 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 35160 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 52843 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 351146 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 352516 35888646 ~ 35888885 (+) True G120611
TU162477 lncRNA downstream 163070 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 170261 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 578080 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 622310 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 622316 36863799 ~ 36866140 (+) True LOC120568212
XM_039816699.1 mRNA upstream 599368 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 797588 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 978499 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1072685 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 207554 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 207554 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 324278 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 347171 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 382594 36624077 ~ 36710812 (+) True LOC120568504
unassigned_transcript_576 other upstream 2765 36238554 ~ 36238636 (+) True trnal-uaa_7
unassigned_transcript_575 other upstream 3100 36238219 ~ 36238301 (+) True trnal-caa_1
unassigned_transcript_574 other upstream 3552 36237767 ~ 36237849 (+) True trnal-uaa_6
unassigned_transcript_573 other upstream 6248 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_572 other upstream 12266 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_578 other downstream 253 36241736 ~ 36241818 (+) True trnal-uaa_8
unassigned_transcript_579 other downstream 704 36242187 ~ 36242269 (+) True trnal-caa_3
unassigned_transcript_580 other downstream 1039 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_581 other downstream 7962 36249445 ~ 36249527 (+) True trnal-caa_4
TU162479 other downstream 163757 36405240 ~ 36405773 (+) True G120716