RNA id: unassigned_transcript_578


Basic Information

Item Value
RNA id unassigned_transcript_578
length 83
RNA type tRNA
GC content 0.54
exon number 1
gene id trnal-uaa_8
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36241736 ~ 36241818 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGgatggccgagtggttaaggcgttAGACTTAAGATCCAATGGGCAAAAGCCCTCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162439 lncRNA upstream 19966 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 35495 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 53178 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 351481 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 352851 35888646 ~ 35888885 (+) True G120611
TU162477 lncRNA downstream 162735 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 169926 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 577745 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 621975 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 621981 36863799 ~ 36866140 (+) True LOC120568212
XM_039816699.1 mRNA upstream 599703 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 797923 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 978834 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1073020 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 207219 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 207219 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 323943 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 346836 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 382259 36624077 ~ 36710812 (+) True LOC120568504
unassigned_transcript_577 other upstream 253 36241401 ~ 36241483 (+) True trnal-caa_2
unassigned_transcript_576 other upstream 3100 36238554 ~ 36238636 (+) True trnal-uaa_7
unassigned_transcript_575 other upstream 3435 36238219 ~ 36238301 (+) True trnal-caa_1
unassigned_transcript_574 other upstream 3887 36237767 ~ 36237849 (+) True trnal-uaa_6
unassigned_transcript_573 other upstream 6583 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_579 other downstream 369 36242187 ~ 36242269 (+) True trnal-caa_3
unassigned_transcript_580 other downstream 704 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_581 other downstream 7627 36249445 ~ 36249527 (+) True trnal-caa_4
TU162479 other downstream 163422 36405240 ~ 36405773 (+) True G120716
TU162480 other downstream 164303 36406121 ~ 36406689 (+) True G120717