RNA id: TCONS_00006691


Basic Information

Item Value
RNA id TCONS_00006691
length 4331
RNA type mRNA
GC content 0.53
exon number 28
gene id XLOC_003422
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22374419 ~ 22584452 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttccaccagagggcgctgcgCGTGACACCATTTCTTACACTGGCGTCTCGTGCATGACAGTCATGTAGTCGCGTGGTGCTGATGTGAGGAACTCCGATTTTACGCTGTTTGCACGAGCTTTCCAGAGCCACGCCGGGTGGATATAATCTTCGCCGACGACGTGGGAGGCATTCAACCTCGACGTCCACCCAAGGCGTCGGTGCgtttatgttttaaaacatgCTCGGATGTTTGTGGAGATAGCGGAATAATCGCTGTGTTGTAAGCGGGGAATGAGCTCGTAGAGGGAGGAGCGCTTCGGCTCGGCTCGCCGTGCAccgagatgatgatgatgatggtggtggtggtggctgAGGGTTCCGGAGGATGCGGCAGACGCGAATTTCACCGATTTCTGAAAGGTTAATGGCAACTGGTGGATGTTAAGGCGAGGTTTAATCAACTCCAATCGGAATATGTATGTGGCGAGCGCTGTGATGGGCGTGCAGCGAAATGTATTGAGTTCCAAGTCAAACTAGGTGGAAAATGTCAGAACGGAAGAGGCCGACACTCATGGACCAGAGAGGTCAAGGTGTGTGAGGGATGCAATTAGTCAAATGAAAGGATGCATGTGCGTTTTAAAACACATGGACATGTTTGATGTGCATTTAAATGGCACTAGATATCAGTAGTGCATCTCAATCttgaatttacaaaataaaaaaaaaattcaaagtaatTTCTAATTTGATTTAGACTTTGTAGTACACCAAGCAATATGATGTGCGAAGTGATGCCAACCATAAATGAGGGGGACTCGGTGAGTTCCCAGAGAGGCTCCCAGAATGGCACGGATGCCGAGTCTAATTTTGAACAGCTGATGGTGAATATGTTGGATGAGAGAGATAAGCTGCTGGAGTCTTTACGGGAGACGCAGGAGACCCTCATCCAGTCGCAGACCAAACTCCAGGATGTGCTTCACGAGAGGGATGTGCTTCAGAGACAGCTCAACTCCGCCTTACCACAGGAGTTTGCGACCCTGACAAAGGAGCTGAATTTGTGTCGAGAGCAGCTGCTAGAAAAAGAGGAGGAGATTTCTGAGCTTAAAGCAGAGAGGAATAATACTAGGCTTCTTCTTGAGCATTTGGAGTGTCTGGTGTCTCGTCACGAGCGTTCACTGAGGATGACGGTGGTGAAGAGGCAGGCTCCTCCGCCGTCCGGGGTCTCTAGTGAAGTGGAGGTGCTCAAGGCTCTGAAATCCCTCTTTGAGCATCATAAAGCCCTGGATGAAAAAGTGCGTGAAAGGTTGCGTGTGGCTCTTGAAAGGGTGACTACATTAGAAGGACAGCTGTCAGCCGCCACTCAGGAGGTGGTGATGCTGAGACAGAGAAAGGATGGAAGAGCAGATGGGGATGCTGTGGACAGGATGGACAGTTCTAAACCTACATGGAAGAGGCTTCCCAATGGCTCCATCGATGCCCATGATGATACCAGCAGATGCCTGGAGCTACAGGAACTGCTGGATAAGGCCAATAAAGAGCTAGCCCAAAACCGAGAGCGGATCGGTGGCCTGACCAATCGCATGTCTGAGCTGGAGACGGAACTGGCTACGGCCCGCAAAGACCTACTGAAGAGCGAGGAGCTGAGCACCAAACACCAGAGGGACATACGCGAGGCGATGGCACAGAAGGAGGACATGGAGGAGCGAATCACAACGTTAGAAAAGCGCTACCTGGCCGCCCAAAGAGAAACCACTTCCATCCATGACCTGAACGACAAGCTGGAGAACGAGCTGGCCACCAAGGACTCTCTTCACCGACAGAGCGAGGAGAAGGTGCGACACCTGCAGGAGCTGTTGGAGCTGGCAGAGCAGCGGCTGCAACAGACCATGAGGAAAGCGGAGACTCTGCCTGAGGTGGAGGCTGAACTGGCACAGAGAGTGGCTGCCCTCACCAAGGCGGAGGAGAGACATGGCAACATTGAGGAGCGTTTGCGCCAACTGGAGGCCCAGCTGGAGGAGAAGAACCAAGAGCTGGGCAGGGCTCGGCAGAGGGAGAAGATGAATGAAGAGCATAACAAACGTCTGTCTGACACTGTGGATCGTCTTCTGACCGAGTCCAATGAGCGGCTACAGCTGCACCTGAAGGAACGCATGGCCGCGCTCGAGGACAAGAATGCACTCATCCATGATCTGGAGAATTCCCAAAAACAACTGGAGGAGTTCCATCACAACAAGGAGAGACTCATTGGGGAGATTGAGAAGTTAAGGGCTGAACTCGATCATCTGAAGCGCAGAAGTGGAGCATTTGGAGATGGGACACATCCTAGGTCTCATCTTGGCAGTGCCACAGACCTGCGGTTCTCCGTGGTGGAGGGTCAGGGCGATCACTACTCCTCCACAGGGGTCATACGACGTGCTCAGAAAGGTCGAATGGTGGCACTCAGGGATGAACCAACCAAGGACTGGGATCGCTCTCAACCATCCAGCTTGCGGGCCAGCCGTACTCACCTGATGGGAAGCGACACTGAGCTCTCTGACTTGGACGATGAAGACCGGGAGACCATATTCAGCTCAGCCGATATACTGTCCCCCAGCGGGCACTCAGACGCCCAGACGCTTGCCCTCATGCTCCAAGAACAGCTGGATGCCATCAATGAGGAGATCAGGATGATCCAGGTGGAGAGGGAATCCGCAGAGCTCCGGGCGGATGAGATTGAGAGTCGAGTGAACAGCGGCAGCATGGACGGCCTGAATGTGACACTGCGGCCGCGCTCCTCCATCCCTACATCCGTTACTGCGCTCTCGCTCGCCAGTTCATCACCTCCTGTCAGCGGCCGATCCACACCCAAACTGACGTCCGGATCCACCGCCCATGAGTTGGGCATCATGACCTTGTCCCCTGTGGAGGCCCGTGAGGACAAGGCCACCATCAAGTGTGAGACATCGCCCCCGTCGTCGCCCCGCAGTCTCCGAATAGACCAAATGAACTTCGCTCAGCTCACAGGAAGCCTTGAGGACGGCAGaggggGAAACAAAAAGAAGGGCATCAAGTCCTCCATCGGCCGTCTTTTTGGCAAGAAGGAGAAAGCGCGTTTAGATCAACCTCTAAGCAAAGACGGCCAGATGACACCACCTGTCATTCAAGATTTCGAGATGAGTATTGGCGATACGATGACCTTGAGTAAACTGGGCACACAGGCAGAGCGAGATCGCAGGATGAAGAAAAAGCATGAGCTGCTGGAGGACGCCAGAAGGAAAGGTCTACCCTTTGCTCAGTGGGACGGCCCGACTGTGGTCTCCTGGCTCGAGCTGTGGGTAGGAATGCCAGCTTGGTACGTGGCAGCGTGTCGTGCCAATGTGAAGAGCGGTGCCATCATGTCTGCGCTGTCGGACACGGAGATTCAGCGCGAAATCGGCATCAGTAACCCACTGCACCGGCTGAAGCTCAGGCTCGCGATACAGGAGATGGTGTCACTGACCAGCCCGTCTGCTCCTCTCACCTCACGCACATCTTCCGGAAATGTGTGGGTGACTCACGAGGAGATGGAAAACATGGCAACCTCTACCAAAATGGACAATGAGGAGGGAAGCTGGGCTCAGACACTGGCGTATGGAGACATGAACCATGAGTGGATTGGGAATGAGTGGCTGCCGAGTCTCGGTCTTCCTCAGTATCGCAGCTACTTCATGGAGTGTTTAGTGGATGCTCGAATGTTGGACCACCTCACCAAGAAAGACCTGCGCACACACCTAAAGATGGTGGACAGCTTCCATCGGGCTAGTTTGCACTATGGCATCATGTGCTTGAAAAGGCTAAACTATGACCGGAAGGAGCTGGAGCGAAGGAGAGAGGATTTCCAGCATGATATCAAAGACACGCTGGTATGGACCAATGATCAGGTGATGCAGTGGATTCAGAACATTGGGCTGAAGGAGTACAGTAATAACCTGCTGGAAAGCGGCGTTCATGGAGCCCTCGTTGCCCTCGATGAGACCTTTGACTTCAGCAGTTTGGCCCTTATTCTTCAGATCCCCATGCAGAACACACAGGCCAGACAGATACTGGAGAGGGAGTTCAATAATCTCCTAGCACTGGGAACTGACCGGCGCCTGGAAGAGTGCGATGACAAGTCTTTCCGAAGGTCTCCATCGTGGCGCAAACGCTTCAGGCCAAGGGATGGCCAGGGTTTGGGTATGATGCCAGGCTCCTTTGAGACCCTCCCTGCTGGATTCCGGCTCAACACCATGTCCATTCCCCACTCCATGACTGCTGTGTCCAAAAAACAGCTGCAACCAGAAGTGCATTCCCACTACCTGTACGGACACAAGCTTGCGGCCTTTCGAGAATGA

Function

GO:

id name namespace
GO:0050808 synapse organization biological_process
GO:0048786 presynaptic active zone cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070720-14 Predicted to be involved in synapse organization. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA4 (PTPRF interacting protein alpha 4).

Ensembl:

ensembl_id ENSDART00000170521

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008600 lncRNA upstream 470725 21902677 ~ 21903694 (+) True XLOC_003419
TCONS_00008598 lncRNA upstream 615394 21612707 ~ 21759025 (+) False XLOC_003417
TCONS_00006696 lncRNA downstream 14599 22596726 ~ 22599593 (+) True XLOC_003423
TCONS_00008601 lncRNA downstream 338342 22920469 ~ 22927188 (+) True XLOC_003426
TCONS_00008603 lncRNA downstream 1012222 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00008602 lncRNA downstream 1012222 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00008604 lncRNA downstream 1313402 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00006690 mRNA upstream 205393 22134540 ~ 22169026 (+) True XLOC_003421
TCONS_00006689 mRNA upstream 208578 22109887 ~ 22165841 (+) False XLOC_003421
TCONS_00006688 mRNA upstream 280027 21910752 ~ 22094392 (+) True XLOC_003420
TCONS_00006687 mRNA upstream 411585 21910343 ~ 21962834 (+) False XLOC_003420
TCONS_00006684 mRNA upstream 776011 21587950 ~ 21598408 (+) True XLOC_003416
TCONS_00006697 mRNA downstream 41157 22623284 ~ 22630389 (+) True XLOC_003424
TCONS_00006699 mRNA downstream 683030 23265157 ~ 23297192 (+) True XLOC_003427
TCONS_00006701 mRNA downstream 987742 23569869 ~ 23571593 (+) True XLOC_003429
TCONS_00006702 mRNA downstream 1122283 23704410 ~ 23884805 (+) False XLOC_003431
TCONS_00006704 mRNA downstream 1178343 23760470 ~ 23879647 (+) False XLOC_003431
TCONS_00006686 other upstream 723781 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 1322075 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 2341234 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006652 other upstream 3283607 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006645 other upstream 3697862 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006698 other downstream 131888 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006700 other downstream 815143 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006723 other downstream 1596696 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 1757235 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 1757247 24339374 ~ 24345421 (+) False XLOC_003446

Expression Profile

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