RNA id: TU164247


Basic Information

Item Value
RNA id TU164247
length 1319
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G122106
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4771055 ~ 4772393 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTTTAAGATCTTAGAACATCTTCATTCATGTCAGACAAAGAAATTGCTCATATATGAAAAACAAGACACCGATcctgagaaaggaaaaaaaaaaaaaaaaaaaacatatccatGATTCCACAAGCACCTTTTGATAACAAAAACTATAATTTTCTTTTGAGGTTGAAGCACACTAGATGAAAAACTAAACATCCTAAAAAAAGCTTGACTACTTGCAACTGTGATAGAAGGGACTGATTGACAAATACACAGCAAACGCAATGAACATAAAAGAGACGAGTTCATATCTGTCACCGAGAGTGCTGAAGCCTGTTAATTTATGGTCACAGGGCAGTTCTACTTCCTACACTTCATACATCCAGTCAACGCTGGGTGCAATTAACACTCCATAAAGATGTACACACGTCCGACATTAACAGGGAAGTGGAATAACATGGACATTTCACCTTCAAATGTAGTGTTTACATCGTGGATTACATGACAGGCACAATAAAAGCTTTTACAGTGGCCGAGAGGGGCAAATCTGCAAAAACCACCAATGCAAAGTAAAAATAACACGGTGTGCAAGTGTGAGTTTCTCTCTTCTTGACTCCAGAAATGTCTCTTCTGCTTCTCCTAATTCTATTAATGGGGTTCACTAAATATCCCCTATACATAAACATAATGCTCTATATACTGAAGTCGATCCACTTTTTGTATACAGCTATAATCTCTTGTTGACCTCATATCGCCCTGTAGGTGTCAAATAATGCCTTTTTCGCATCCAGCCACAGTTCGTATTggatttatgactttttttttttttgcatttcgtTTCTAAGTGGTTGGGATGTACTTTCCATGTTTATTTGTTATCTAGCCATGGACCCAGGTAGTCTAACTTTTGGGCCACCCCCACACCAAAAACAATAGCTGTAATGACAACGATGTGAGATTAGTGGTGCCAAGCAGACGTAAGATTACAGAAACTGTCAGAAGTAATATCGTACACATTCATTAACTTGGGTGTATTTCATAACCCTAAAAATAAGGTTATGGTCTACTTACAGAGGGAATCAGAGGGCAACCGGGCGGAGGGTCTGTTCACAGCtaaaacacattacacattacacatcaCCGACATATGATAACATCAAAAGATTTGACTGTGTGTTCTGTGACATGACAAATACTTTCAAAATATGTATGTTTATGAATACAAAAACTGAGTGGAAAGATCACGCCACTGATACTGCAGTGTGGCACAAATACACTCAAAGTGCTACTGTTCATACATTTCACGGTGAACTATTTCATTTTGTCGTTTCACAAAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164172 lncRNA upstream 83102 4687606 ~ 4687953 (+) True G122041
TU164171 lncRNA upstream 85474 4685140 ~ 4685581 (+) True G122040
TU164169 lncRNA upstream 87009 4683455 ~ 4684046 (+) True G122038
TU164170 lncRNA upstream 134075 4636573 ~ 4636980 (+) True G122039
TU164163 lncRNA upstream 188026 4582819 ~ 4583029 (+) True G122034
TU164257 lncRNA downstream 46222 4818615 ~ 4819436 (+) True G122115
TU164258 lncRNA downstream 46222 4818615 ~ 4819095 (+) False G122115
TU164264 lncRNA downstream 72934 4845327 ~ 4847155 (+) True G122120
TU164297 lncRNA downstream 172340 4944733 ~ 4946608 (+) True G122142
TU164304 lncRNA downstream 200458 4972851 ~ 4973737 (+) True G122148
XM_039817104.1 mRNA upstream 54442 4689814 ~ 4716613 (+) True LOC120569284
XM_039818056.1 mRNA upstream 95374 4586404 ~ 4675681 (+) True LOC120569891
XM_039818058.1 mRNA upstream 95374 4586405 ~ 4675681 (+) False LOC120569891
XM_039818053.1 mRNA upstream 99949 4586403 ~ 4671106 (+) False LOC120569891
XM_039818054.1 mRNA upstream 99949 4586403 ~ 4671106 (+) False LOC120569891
XM_039817828.1 mRNA downstream 26436 4798829 ~ 4815157 (+) True sympk
XM_039818576.1 mRNA downstream 43696 4816089 ~ 4818139 (+) True zgc:136439
XM_039818283.1 mRNA downstream 58287 4830680 ~ 4841508 (+) True slc40a1
XM_039817433.1 mRNA downstream 99924 4872317 ~ 4894063 (+) False stat4
XM_039817431.1 mRNA downstream 99925 4872318 ~ 4894063 (+) True stat4
TU164165 other upstream 50212 4718285 ~ 4720843 (+) True G122036
TU163990 other upstream 660622 4108030 ~ 4110433 (+) True G121917
TU163720 other upstream 1799723 2962205 ~ 2971332 (+) False ndufv3
TU163721 other upstream 1799723 2962205 ~ 2971332 (+) False ndufv3
TU163718 other upstream 1799723 2962578 ~ 2971332 (+) False ndufv3
TU164256 other downstream 43745 4816138 ~ 4817784 (+) False zgc:136439
TU164274 other downstream 122392 4894785 ~ 4895502 (+) True G122128
TU164284 other downstream 202463 4974856 ~ 4982979 (+) True fkbp7
TU164393 other downstream 287608 5060001 ~ 5070131 (+) True LOC120569936
TU164394 other downstream 287608 5060001 ~ 5067978 (+) False LOC120569936

Expression Profile