RNA id: TU164264


Basic Information

Item Value
RNA id TU164264
length 1588
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G122120
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4845327 ~ 4847155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAAAGCTTTAAGAAAGGCTTAcatcttttttattaaattcatTCATCAAGTATGGAAAAATGGGTACTTGCACATACTGCATATGTGCATGCATACAGAAAGTTTTCACCCCGCAGCTGGACTTTTTCTGGTTTAAACATGAATCAATGGATCTGAGCtctactgtttattttttttcaacaaaaagtaTTTCatgtgcaataaaaaaaaaaaaataataattcaccCTACAAATGGATCAAAACAAATGATTGCataagtatccctttaactatGATATACCAAAATCAACACTGGTGCAGCCAGTTGTTTAGTCAAGGCATGGCAGTTAAATAAAGCTGTATGTGGCAGGACCAGGTGTATTTTAGGATTTCCCCTACTAGGGGACGATGGTGGATTAGCTCCGCTGATATGAAGAAGAAATTATAAATTGCTATAATGAGCACACTGCACCAAATTAGAGCATTGCATCTTGAATTGAATCTTATCAATAATTATGTCAGACAAGAAAAGGGTGGGGAAGACAAAGAAAGTTTTCAGCCAAGTCTGTGACAAGCAAACTGAAAAATGAACAAGCCAGAGGAAggacacacaaaacatttactATGGGCCCAATCTCCCTCAGAGTTCAGTAAGAACAGCAGTATGGCACGGCCATAGCTGTGTAAGTCAAAGCTCCTAACATACTCCGCTAGTTATTAACAGCAGGCATGTGAGACTGAAAGGAAATAAGAGAAGGTTCTGTGGTCTTTTGAAGACAAAAATTGAGCTTTTTGATCAGAAAACTAAACCGGAAATCAGTAAAAACACACCATCCCCTGCATGAAGTCTGGTTGTGGCATCCATTCCTTCTCTGCAGCAGCAACTCGGAGGTCCCGAAGTCAGCACGTAACAGGGAGCCGTTTTACAAAAGTGATTTGCGAGCACTGGCTCTAGCTGGAGAGCGAGCGTCACAAATGGGGGCGGTTGACCATTTCAAAAAAAAGATTCAACGTTGCTGAGAAACGTGGAAGTCCTACGGAGCCTTTTGCGTTTTTACAGAGGACAATTGGGGagttgttttattgttcaaaTGTGTAACCTGATACAAACATGTCCACGTTGACTCAAGGCTGTAACTGCTGCCAAAGGAGAGGATACTTGTGCAatcaaatattttctgttttgtaattgcctagagatttttttttcctttccaaaAGCAATCCATTCTGATAGAACGACgtaacacaataaaacatgtcTTAAAACCCAGTGATGTGCTGAAAACTTTCTAtaggcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcgtcTTTGCACAGGGTCATGTTCAAGAGTGCAAGAGATGTGCGAACCAGCTGTGGTCCAGTTTCTTCACCCTTTTCAGTTCCCTATGCTGGGCCTTTGTCAGAGTGGGGGCTGCCTGGCCTCCCAGCGGCGCCTGCTCTTGCCTCTGGGTGCTGGATTCCATTTCCCCTTCTgaatcctcttcctctttctcgcTCTCCATTTCCTCCTCGGCGTGTTTGGTTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164257 lncRNA upstream 25891 4818615 ~ 4819436 (+) True G122115
TU164258 lncRNA upstream 26232 4818615 ~ 4819095 (+) False G122115
TU164247 lncRNA upstream 72934 4771055 ~ 4772393 (+) True G122106
TU164172 lncRNA upstream 157374 4687606 ~ 4687953 (+) True G122041
TU164171 lncRNA upstream 159746 4685140 ~ 4685581 (+) True G122040
TU164297 lncRNA downstream 97578 4944733 ~ 4946608 (+) True G122142
TU164304 lncRNA downstream 125696 4972851 ~ 4973737 (+) True G122148
XR_005640994.1 lncRNA downstream 217815 5064970 ~ 5070248 (+) False LOC120569936
TU164410 lncRNA downstream 247469 5094624 ~ 5152883 (+) True G122225
TU164406 lncRNA downstream 248772 5095927 ~ 5153550 (+) False G122224
XM_039818283.1 mRNA upstream 3819 4830680 ~ 4841508 (+) True slc40a1
XM_039818576.1 mRNA upstream 27188 4816089 ~ 4818139 (+) True zgc:136439
XM_039817828.1 mRNA upstream 30170 4798829 ~ 4815157 (+) True sympk
XM_039817104.1 mRNA upstream 128714 4689814 ~ 4716613 (+) True LOC120569284
XM_039818055.1 mRNA upstream 174221 4614806 ~ 4671106 (+) False LOC120569891
XM_039817433.1 mRNA downstream 25162 4872317 ~ 4894063 (+) False stat4
XM_039817431.1 mRNA downstream 25163 4872318 ~ 4894063 (+) True stat4
XM_039817432.1 mRNA downstream 25163 4872318 ~ 4894063 (+) False stat4
XM_039817440.1 mRNA downstream 51369 4898524 ~ 4915505 (+) True LOC120569565
XM_039817449.1 mRNA downstream 127634 4974789 ~ 4981992 (+) False fkbp7
TU164256 other upstream 27543 4816138 ~ 4817784 (+) False zgc:136439
TU164165 other upstream 124484 4718285 ~ 4720843 (+) True G122036
TU163990 other upstream 734894 4108030 ~ 4110433 (+) True G121917
TU163721 other upstream 1873995 2962205 ~ 2971332 (+) False ndufv3
TU164274 other downstream 47630 4894785 ~ 4895502 (+) True G122128
TU164284 other downstream 127701 4974856 ~ 4982979 (+) True fkbp7
TU164393 other downstream 212846 5060001 ~ 5070131 (+) True LOC120569936
TU164394 other downstream 212846 5060001 ~ 5067978 (+) False LOC120569936
TU164412 other downstream 317078 5164233 ~ 5165898 (+) True G122226

Expression Profile