RNA id: XR_005640994.1


Basic Information

Item Value
RNA id XR_005640994.1
length 3134
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120569936
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5060001 ~ 5070248 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttctacagggcccagaattttgtgctctGCCCctggccagaccctcctctgcagcgccgtggaggaaggtctggcaaagcgagacaatgcctgagcaagcacagcccgCCCTACGGCTTGTTTGAATTAAGTTGACCAATCGCAACAGAGTGGgtcagctgaccaatcagagaagactgggcttttcaggaaggTGGGCCAAAGTGCTCAGACAGAGCGTTTcaggcagaggagctgcagcaatggacagtatgagaaaagataatatgttttttaaacatcaaatcatgtaaacctattccagtagaccccaagagtacaaaAATGATGCTAAAAAGGAgaataataggggctctttaaaatAGTGTGGTGCTGCTCCATAATCGAGGGCAACAATACAAACTAATAGAGTAGATATATTTGGAATAGAGGTTCACAACCGCCAAAGTCCTTAATGAATGTTACTAAGAGCCCAACACGGTTTTCTACTTATTTTCTATTTCTATCCGAGGGGACATTGTACAGGTCTTTGTCCACTGGACAGAGAGGTAGTGGAGCTGCAGATTGGTGCACAGTTACTCTAAATGATGTCATTGGGATTTGCCCAAAATTCAAGTCACATTGCTAGCATTGAGGACACTTAAACTGCCACATAAATATTTGCAGTAATAACAGCTTTGAAGAGTGTTGTAGTAATTACCATAATAAAAGGAACCAGTAACCGTATACCTTCAACATAAGCTGATAAGCCATATCAAACACTGGCAGGGTATTTTTCTCTGCACTTGCCTTCTCCCCAGGTCCTCTCTTATAGCGCTAACAGTGTTTCAGAATTGACATAAAACTGGCCGTGTTATGTCACATTGCGTTGGGAAGTCTAACCAATACAGATGTTTCAGTGCGGTCTGAAACTGTGGCCATTTTAGTGAAGGGCAGCATCATTCAAAAACACCTCAGTTGGGGTGAGCCGCTGGGTGATGGTTGATCAAATGTCTGCTGACTGAGAGAggtcccccccaccccaccccacccacccaAAGGAACACAATGCATTCCATAAAACACCTCCCCACACACATCCCTCTGAAAGTCAACTCCTGAAACATAACTTGTACTAATCTGTGTGGACAGATTAATCTGTTGGGGTCATCCCAAACATGTTGTGAACGCACTAAAGATTAGAGATGACACGGTTCTCCACACGCCACATTCCTAATTCTTAAATCGGatgccatttgttttttttgagtcAGATAAAATGATGAAGGCTGATGTCCCTTTTGTGCTGAACACAGTTTCGGTCAAGGTtgggacaaaacaaaaacaaaaggccCGTTTCAAAAGCACAAGAAAGAGCTGATGGCAGTGTGAGGAGAACGTGATGGTCGGTTCACGCAATTAAAGACGCACATTTCTTTACAGTTTACATGCTGGAGGATGCCGAGCTGGAGGATAAACCGGGTCACGGGGATCTATTTCTTTAGGCTATACATTAAAGATGTTGCCATAATGTTGGCTTTACTGTGCATTTTGAGTGTAATGTCATCACGttagtttcatttttttctttttacaaattgTGGGATCaccttttgtttacagattCACAAGAGGTTCAGTTTTTGTAACTCTGCTAAAGATAGGTCTCGTGGTTGCTTAAAAGAAAATCAGCGATTTGGATTTTCCTTCTTCAGACAGCCGTGAAGGGGCTGAATCTGCACAAGGAGTTCAAAGTCTGATCCAACGTGAACGCCTGTCTTTATTCAAACATCTGTGTCTTCCAGTTGatgcttttagcactgactgaAGGTCTGCCATTGCTTCCCTTTGGAAACTGtcatttgtagtttttaaaggtcacacattttaaattattaaataccAGCAGGTGTTTGGACCGAGATGGAGAGGCTGCTGAGTTGGCCACCATCCCTTTTTGCAGAATTTATTCATCTTGAAAAGGATAGGTTCCCCCGAGGCGCAGGGTCTGGAAGGCCGTCGTGCCCTTTGGTATGGATTCAATTAGGGCTGCCACTAACGATTCATTTCATCATCAATTAACTGCTTAATTGAATTAGTTATTTACCGTTtcatctataaaatgtcagaaaatagtgaaaaaataCCCGTGCTCTTATTTTGATAGCTGGTTTTGTTCAACTATTTtcggacattttatagacaaaacggTTAATCATGgatttaattgacagattaattgataatgaacaaAATCGTgtaacagtccaaaacccaaagatgttcagtttactatcaTCCATGGCAAAGAAACGCATCCTGACATttaatgtttgtcatttttacctgaaaattgactaaaacaatGAATTGTCAGGAAAAGTTCCAGATTAATTTTCTGCCACTCGAATAATCGTTTAAATGAGTTGCTTATGGGTTCTTATGCAGCCAGAGCGATAGTAACAATTGAACCTACTAGTCCTTAATTCCCTACACTATTAATGTTAAGCTGTTGGGCAAAGtaaagcatttaaatgtatAACTAGGCCTTTAAATATTCAACAATCAGCCCACGATTCAAAGCTGCGCCATTAGCCTGAAACCATATCAGCTGATCCCCTAATGCATTATCTATGCCAGATTAATCTTAGCACAAGTGATTACAGGGTTTGGACTCCTGTACCCACAATGCCTCTGATGTATCTGTGTTTTACAACAGTCACTGACCCATAGACCAAACAGCAGTCAGGGAGGAGGAGCTGAAGCAAAAGCAAGCTGACTTGACTAGAAAAACTTTTTCCATGACTTGCCTGCTGCCAAATACGCAGTACAGTCCTCACACATGACTGACCATAAAAAGGGATGTGGGGACAGGAGGCTTGGCCAAGGCTTGGTAGTGTGCGTTTGAAGGTGGGAAGCATCAGAAAGTCAGGTCTTTGTCTCCCAGCGAGGAGAAGCACTGCTCCACGGCCTGCTCAGACACCTCCTCCAGTGTCGACGGCTTCCACTTGGGATTCTGGTCCTTGTCAACCAGCACTGGAAACATGCAGAAAAACCACGACGCAGAAAGGGGGATCAGATGATGTGACTGACATGATGCCGAGCAAAGAAAACTAGTATTTATATGATCCATTAAATAACATTTAGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164304 lncRNA upstream 91233 4972851 ~ 4973737 (+) True G122148
TU164297 lncRNA upstream 118362 4944733 ~ 4946608 (+) True G122142
TU164264 lncRNA upstream 217815 4845327 ~ 4847155 (+) True G122120
TU164257 lncRNA upstream 245534 4818615 ~ 4819436 (+) True G122115
TU164258 lncRNA upstream 245875 4818615 ~ 4819095 (+) False G122115
TU164410 lncRNA downstream 24376 5094624 ~ 5152883 (+) True G122225
TU164406 lncRNA downstream 25679 5095927 ~ 5153550 (+) False G122224
TU164424 lncRNA downstream 47790 5118038 ~ 5173231 (+) False G122235
TU164403 lncRNA downstream 48797 5119045 ~ 5122666 (+) True G122224
TU164405 lncRNA downstream 48797 5119045 ~ 5122666 (+) False G122224
XM_039817441.1 mRNA upstream 33082 5001871 ~ 5031888 (+) False pms1
XM_039817442.1 mRNA upstream 33082 5002129 ~ 5031888 (+) True pms1
XM_039817445.1 mRNA upstream 67033 4986533 ~ 4997937 (+) False adat3
XM_039817444.1 mRNA upstream 67033 4991651 ~ 4997937 (+) True adat3
XM_039817446.1 mRNA upstream 67033 4991835 ~ 4997937 (+) False adat3
XM_039818767.1 mRNA downstream 44078 5114326 ~ 5115705 (+) True LOC120570421
XM_039817137.1 mRNA downstream 48890 5119138 ~ 5125387 (+) True LOC120569312
XM_039818829.1 mRNA downstream 138854 5209102 ~ 5211902 (+) True ybey
XM_039818826.1 mRNA downstream 162122 5232370 ~ 5242872 (+) True cnot9
XM_039818827.1 mRNA downstream 162125 5232373 ~ 5242872 (+) False cnot9
TU164284 other upstream 81991 4974856 ~ 4982979 (+) True fkbp7
TU164274 other upstream 169468 4894785 ~ 4895502 (+) True G122128
TU164256 other upstream 247186 4816138 ~ 4817784 (+) False zgc:136439
TU164165 other upstream 344127 4718285 ~ 4720843 (+) True G122036
TU163990 other upstream 954537 4108030 ~ 4110433 (+) True G121917
TU164412 other downstream 93985 5164233 ~ 5165898 (+) True G122226
TU164440 other downstream 138885 5209133 ~ 5211848 (+) False ybey
TU164880 other downstream 2076377 7146625 ~ 7149039 (+) True G122588
TU165208 other downstream 3725205 8795453 ~ 8796746 (+) True G122846
TU165423 other downstream 4850463 9920711 ~ 9924840 (+) False umps

Expression Profile