RNA id: TU164405


Basic Information

Item Value
RNA id TU164405
length 923
lncRNA type sense_over
GC content 0.42
exon number 4
gene id G122224
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5095927 ~ 5153550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGCCCCTGCTGATGACCAATCTGAGGTGTGGCTTTACGTGTATATAAAGACAGAACCAGCTGACTgctgtatctgtatatctgcaCTCCAGCACACGGGTTTGGATCTGGATTTTTGAGATGAACTGGAATAACATAGGAAACCGGCTTCTCTCAGCCATTTTTCCTCAGCCAATGGCAGGAGGATACAATCCCCAATATCCACCAGGCACTGTCTACCCTCCTCAGCCTTGGGGTGCACCTGGGTACGGTACTGTAGCCCCACCTTATGGAGGGTATGGACCTGGCTATGAGTCTTGGCAGGGATATGAGCACAggcatcgtcatcatcatcatcatcatggtcATCATCATGGACATCATCATGGTCATCATCATggtcatcatcaccatcatggCTGCTAACACAATCATGGTCACAAGAAAGGAAGCACGTGTCATGGGTACTCCAGCAGCGACTCGGACTAGATGAAGATGAAGGAAACAAGACAAGTTGCCACCAGGAATCCTTCACCCTGCTACCTTATAGTAGATTATAATAAACAGTTTGTTTGATTTCAAATGTTGGGATTATAAAACGCACCACAAGGTTTTTAGAAAGCTGTTAAAGTCAGGTTCAGCTGTTACATATTATGAAGTGTTTAGCCAATGTATTTGAAAATAGAagtaatgtattgtagtgatGTATTAGCTTCGGCAGTAGTCAGTGTGTGACAAGGGGTATGTTTTTGATGTATTTGACAATAATTGTAATTGTTCCCTTGTggtaaacaacataaaaaaggtTTCTGTTATTCATAAAATCATGTCATCCTGCAATGCCCTGCCTCTTTATTCCCTATTCCATTTGACCTCATAGTTTCcattactctgtgtgtgttttctatcAGTGtgtattaaaattatttttatgtatCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640994.1 lncRNA upstream 48797 5064970 ~ 5070248 (+) False LOC120569936
TU164304 lncRNA upstream 145308 4972851 ~ 4973737 (+) True G122148
TU164297 lncRNA upstream 172437 4944733 ~ 4946608 (+) True G122142
TU164264 lncRNA upstream 271890 4845327 ~ 4847155 (+) True G122120
TU164258 lncRNA upstream 299950 4818615 ~ 4819095 (+) False G122115
TU164423 lncRNA downstream 48391 5171057 ~ 5172608 (+) True G122235
TU164456 lncRNA downstream 93134 5215800 ~ 5216949 (+) True G122266
TU164529 lncRNA downstream 164808 5287474 ~ 5288145 (+) True G122317
TU164533 lncRNA downstream 173988 5296654 ~ 5297055 (+) True G122319
TU164534 lncRNA downstream 174469 5297135 ~ 5298605 (+) True G122320
XM_039818767.1 mRNA upstream 3340 5114326 ~ 5115705 (+) True LOC120570421
XM_039817441.1 mRNA upstream 87157 5001871 ~ 5031888 (+) False pms1
XM_039817442.1 mRNA upstream 87157 5002129 ~ 5031888 (+) True pms1
XM_039817446.1 mRNA upstream 121108 4991835 ~ 4997937 (+) False adat3
XM_039817447.1 mRNA upstream 125236 4991682 ~ 4993809 (+) False alkbh6
XM_039818829.1 mRNA downstream 86436 5209102 ~ 5211902 (+) True ybey
XM_039818826.1 mRNA downstream 109704 5232370 ~ 5242872 (+) True cnot9
XM_039818827.1 mRNA downstream 109707 5232373 ~ 5242872 (+) False cnot9
XM_039818816.1 mRNA downstream 121472 5244138 ~ 5265908 (+) True LOC120570455
XM_039818818.1 mRNA downstream 121472 5244138 ~ 5265908 (+) False LOC120570455
TU164393 other upstream 48914 5060001 ~ 5070131 (+) True LOC120569936
TU164394 other upstream 51067 5060001 ~ 5067978 (+) False LOC120569936
TU164284 other upstream 136066 4974856 ~ 4982979 (+) True fkbp7
TU164274 other upstream 223543 4894785 ~ 4895502 (+) True G122128
TU164256 other upstream 301261 4816138 ~ 4817784 (+) False zgc:136439
TU164412 other downstream 41567 5164233 ~ 5165898 (+) True G122226
TU164440 other downstream 86467 5209133 ~ 5211848 (+) False ybey
TU164880 other downstream 2023959 7146625 ~ 7149039 (+) True G122588
TU165208 other downstream 3672787 8795453 ~ 8796746 (+) True G122846
TU165423 other downstream 4798045 9920711 ~ 9924840 (+) False umps

Expression Profile