RNA id: XM_039818829.1


Basic Information

Item Value
RNA id XM_039818829.1
length 1180
RNA type mRNA
GC content 0.46
exon number 4
gene id ybey
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5209102 ~ 5211902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGTTCCGGTCCGACAATCTTTTAGGTCCCCGTTATGGCTATCCCCGCTACTGCCAACGTTGTGACCGATTCATTGGTCAAATAGGTTTTCCACAGGCGAGGAGCCATTTTCCGTAAACGTTAGAATATGTTTAATGTCTCTCAACTATGTTGTTATCTAGCTACACACCCCAGAGAAAGCGTACATAATCAGTTTCGGGGACGTAACGTTACATGTTGCTACTGCCGCCGGGACGTGTCACCTTGAATTCTGCCTGCCGCTCTTTGGCTAACGCAAAGCTGACCCACTCTTATCGTACCGCCACAGAAGTATTGCAACTGGCCGTGGTCGGTGGTTGGATAGTTTCAACGTTATCTATGTCTCAGGAATTGCCAAATAACCGTTTTCTCTTTTTACGCCGAATTTTAAAATGGGAGTAGTGCTGCGGAATCTCCAAAAGGTGGTGCCTCTTCGCCGCGCCAGACTGCGCAAGGATGTTGATACACTGAGGCACATACTGGGCATCCACAAATTTGACCTGGGCATCGTTTGCGTGGATAACAGCAGGATTCAgcaaattaataatatatacagaaagaaaaatgtGCCAACTGATGTCCTCTCATTTCCATTCTACGAGGACCTGAGGCCTGGTAAACTGCCTTCCCCCCTTCACAGGGATGAGCTGAACCTTGGGGACATTTTCTTGGGTGTCGAGTTTGTGATGAAGCAGTGTAAGGAGGAAGCCCTAGATCTGCATGGAACCCTCACTGTTGTCACTGCACATGGTATCTGTCACCTGTTGGGCTACAGACATGAGACGGAGGAAGAGTGGACTGAGATGCTGCAGAGGGAACACTACATTTTAAGTGAGTACAACAGACTCACAGGGAGACATCTGGAGCCACTGATGAAGAGATGCAGTCAGGACAGGTGACAATGACTGTCAACCTGCCAGCTTTACACTCACACTATGGTGCTTGCTATTGTTTTTCACTACCTTTTTAACCAGGTGGACTACTGTTCTGAGTGTATTTACTGTCATGCTGTCTTCTCCACAATCTGCGACTACTGCTTTTAAGGACTTTAATCAACCGGCAGACGTACAGCGGTTTGATTGTGGATATCATCTTCAAACACTGGATGTGAGTGTTGTTACAGAGTTTtaaacatcaaataaaaaaaaataagtctgTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164424 lncRNA upstream 35871 5118038 ~ 5173231 (+) False G122235
TU164423 lncRNA upstream 36494 5171057 ~ 5172608 (+) True G122235
TU164406 lncRNA upstream 55552 5095927 ~ 5153550 (+) False G122224
TU164410 lncRNA upstream 56219 5094624 ~ 5152883 (+) True G122225
TU164403 lncRNA upstream 86436 5119045 ~ 5122666 (+) True G122224
TU164456 lncRNA downstream 3898 5215800 ~ 5216949 (+) True G122266
TU164529 lncRNA downstream 75572 5287474 ~ 5288145 (+) True G122317
TU164533 lncRNA downstream 84752 5296654 ~ 5297055 (+) True G122319
TU164534 lncRNA downstream 85233 5297135 ~ 5298605 (+) True G122320
TU164535 lncRNA downstream 86972 5298874 ~ 5299221 (+) True G122321
XM_039817137.1 mRNA upstream 83715 5119138 ~ 5125387 (+) True LOC120569312
XM_039818767.1 mRNA upstream 93397 5114326 ~ 5115705 (+) True LOC120570421
XM_039817441.1 mRNA upstream 177214 5001871 ~ 5031888 (+) False pms1
XM_039817442.1 mRNA upstream 177214 5002129 ~ 5031888 (+) True pms1
XM_039817446.1 mRNA upstream 211165 4991835 ~ 4997937 (+) False adat3
XM_039818826.1 mRNA downstream 20468 5232370 ~ 5242872 (+) True cnot9
XM_039818827.1 mRNA downstream 20471 5232373 ~ 5242872 (+) False cnot9
XM_039818816.1 mRNA downstream 32236 5244138 ~ 5265908 (+) True LOC120570455
XM_039818818.1 mRNA downstream 32236 5244138 ~ 5265908 (+) False LOC120570455
XM_039818817.1 mRNA downstream 32236 5244138 ~ 5265908 (+) False LOC120570455
TU164412 other upstream 43204 5164233 ~ 5165898 (+) True G122226
TU164393 other upstream 138971 5060001 ~ 5070131 (+) True LOC120569936
TU164394 other upstream 141124 5060001 ~ 5067978 (+) False LOC120569936
TU164284 other upstream 226123 4974856 ~ 4982979 (+) True fkbp7
TU164274 other upstream 313600 4894785 ~ 4895502 (+) True G122128
TU164880 other downstream 1934723 7146625 ~ 7149039 (+) True G122588
TU165208 other downstream 3583551 8795453 ~ 8796746 (+) True G122846
TU165423 other downstream 4708809 9920711 ~ 9924840 (+) False umps
TU165424 other downstream 4714915 9926817 ~ 9928891 (+) False umps
TU165581 other downstream 5395582 10607484 ~ 10618696 (+) False lrp1bb

Expression Profile