RNA id: TU164597


Basic Information

Item Value
RNA id TU164597
length 1252
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G122374
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 6010632 ~ 6011905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaaataaatgaacgaTCCActaaaaaaataggaaaacaatctgtgatatgtaacattattccagccgttatcttatgaaaaaacagtaaatataataatgaaaagaGCAATACtatttcaaaaatgttgaatCTCAAATGTTCAAATCTCATTTCGATTTGGAAATGATGAATCATTCAgccctaataataattaataataaaataattctgACAGCGGGTCATGCTAATTTGCACTCGGCACCTGTGGTGCAGAGAGATCGGGAAATGTCGACTCTCGCAAAACATATATATCACGGGAGCTCTTAAAATACACCTTGATTTAACGAAAATGAGTTAGGAAACATTAGCCGATCCATAGGGctaatttctgtttatgtctgTTGACGTTTGGATGGACAAGCGTTTGAAAGGATATAAAACCAAAGGCTCAAGCTGTTCGTCCCGTTAGAATCTTCACAAAATCTCTAAAACGGAGCCGCCGAGTGCAAAGTTGGCCTGACCCATACTCAGAACAGCCAATTTGAAAAAGGTACTGCTATTTCCCTTCAAGTAATAGACATGTAAAACCCCCAAAAATCTGTTACATGTAACACAAAATTGAAATCTGGAATATTATTATCGAAGTGTACAATTATAGGCAATATTTGGCTCTGGCTCTGTCCACAGATAACACAATTTGCCTACCAGCACTGGTCACTTATACAcatgttgtgtctctttttcttttatttatacaaaaaccaaagtgtaaaaacaacaattcacTGTTAATTGCTATGAATGACAAATCATTTTCATCCTAAAACATTAGATTACATGAAATCAAATGTGCACCACCCGACTGGCTGATATTCCTTCCAAAGCAACTGTCAAGCCATAGATTGTTTTCTCCCATATATTTGTACATTCTGTAGGCAGAAATCTACGCTCAACTGTCTAAATacttggtaacactttacttgaaggtatctacataagggtgacatgacactgtcatgaacacatgacacagtcatgaccctaaccctaacccatgaaccctaaccctaactctaacttttcatgacaaaaaccgattataaacatttatgacttgtttataatgtttatgacacgttcatgacagtgtcatgtcactcttatgtagataccttcaagtaaagtgtaaccaaatacTTGGATGTGTGAACTTTCTTAAACATTATTATGTCCCACCTGTCTGGCACTCTGTTTTACTGATACTTGTAT

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640860.1 lncRNA upstream 443904 5565241 ~ 5566728 (+) True LOC120569309
TU164572 lncRNA upstream 448771 5560802 ~ 5561861 (+) True G122349
TU164535 lncRNA upstream 711411 5298874 ~ 5299221 (+) True G122321
TU164534 lncRNA upstream 712027 5297135 ~ 5298605 (+) True G122320
TU164533 lncRNA upstream 713577 5296654 ~ 5297055 (+) True G122319
TU164613 lncRNA downstream 50728 6062633 ~ 6062883 (+) True G122390
TU164615 lncRNA downstream 59559 6071464 ~ 6072128 (+) True G122392
TU164616 lncRNA downstream 79207 6091112 ~ 6091467 (+) True G122393
TU164617 lncRNA downstream 79741 6091646 ~ 6092009 (+) True G122394
TU164618 lncRNA downstream 82372 6094277 ~ 6094679 (+) True G122395
XM_039817235.1 mRNA upstream 890 6001841 ~ 6009742 (+) True LOC120569363
XM_039817994.1 mRNA upstream 73511 5922694 ~ 5937121 (+) True LOC120569854
XM_039818274.1 mRNA upstream 440274 5567426 ~ 5570358 (+) True LOC120570043
XM_039817476.1 mRNA upstream 458470 5304569 ~ 5552162 (+) False tns1b
XM_039817710.1 mRNA downstream 136667 6148572 ~ 6228385 (+) True col5a2a
XM_039817848.1 mRNA downstream 428475 6440380 ~ 6514677 (+) True tfpia
XM_039817849.1 mRNA downstream 504952 6516857 ~ 6565305 (+) True calcrla
XM_039817561.1 mRNA downstream 993662 7005567 ~ 7044051 (+) True obsl1b
XM_039817562.1 mRNA downstream 993663 7005568 ~ 7044051 (+) False obsl1b
TU164440 other upstream 798784 5209133 ~ 5211848 (+) False ybey
TU164412 other upstream 844734 5164233 ~ 5165898 (+) True G122226
TU164393 other upstream 940501 5060001 ~ 5070131 (+) True LOC120569936
TU164394 other upstream 942654 5060001 ~ 5067978 (+) False LOC120569936
TU164284 other upstream 1027653 4974856 ~ 4982979 (+) True fkbp7
TU164880 other downstream 1134720 7146625 ~ 7149039 (+) True G122588
TU165208 other downstream 2783548 8795453 ~ 8796746 (+) True G122846
TU165423 other downstream 3908806 9920711 ~ 9924840 (+) False umps
TU165424 other downstream 3914912 9926817 ~ 9928891 (+) False umps
TU165581 other downstream 4595579 10607484 ~ 10618696 (+) False lrp1bb

Expression Profile