RNA id: TU164745


Basic Information

Item Value
RNA id TU164745
length 2051
RNA type TUCP
GC content 0.44
exon number 6
gene id LOC120569614
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 6640881 ~ 6681994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatacttcttccaccactggcagGCTGTAGGTCAGGTTCAGATAGTTCACTCAGAGTTCAGACAGAAAGATGGGACATTTATCAGCGCTCTGAGCTACAATGGAGATCTCACAGACAGCTACAGTAAGGAGGAGTTCCAATGGGCTGCTGTAGCGCAACCATAGACTGTGAACGCAACACGTAGATATGTAAACCTGTGAGTGTGCTGTGCTTCAGAGCAGACCACCATGTTAAACTGGTGTGTATGCTGCCTGTGTATGCCCTACCCCCAGCTGGCTGTATGTTCACACACACTGTGGGAGAGAATAAAGGAAGTACAGTAAACTATCTCTGCTGCCCGGCGCGTAACCCTGGCACAGCGAAGACGCAGGAAGCAACAAACCTTTGGTTTCCGACGTCTATATAAGCAGAGAACTTTTTCATATTTCCTCCTTTAGATCTACAGTCATTTTCTACCCGCAGGTTTTGTTGAACTTTATCTACACCCCGACAAACCACTTCCAACAAAGATCATGGACCTGGGGCAAAAGCAGACTGCAGCCGCAGAGAAACTCATGGCTTTAATCTCAGGCTCACGGACACGACCAGTCGCCGATAGCAACAGTGTTGTTACCGACAGAACAATCACaaatgtaaagggaaacaaCTTCAACATGGCGGTTAATACAGTGAGTTATCCAGGAAGCGGTCCAAGTGGAAAAGCTGGTGGAGAAGATACGCAGGCAGATTGCTCTGCACGTGGCGGCAGTGTGATTTGTACTGATCATATATCAGATGTTGATGTTAAAGGGGATATCGATTTCTCAGTGACTGTGAAACCAGCAAATGCACAGTAGACGAGACACTGCCGGACtctcagGCCAAGAAACATGGTGGCCACCCCATTCACCTCCAGTCTCCATTACATCCAGGGCCCAGGGTTCCTCCAACTCTACTCATCACAAGACCCGCTCCACATTCCATCATCATCCATTACCAGATCTTCAGCCAGCTCTCTTCCCCATCACCAGTGTCTACTCAGGCTGTTTGCTAACTTATATTAAGAGGAAGACGCTCAATAGGGTGTCCCTATAAGCACCGTCATCCATGTAGGCCGGCTGGGGTTATTGAGTGTCTTgctttttaaaatagttttagCATTTACTGTTGTTTTTCTGGGGATGTTAATTAAGTTTTACTTCATGCTATTAAATATGGAACTATGTTTACtatgtttatttgcatgtgttatATACACAATTGCTTACACTTTCTCCATgcaatattttttctttttcttttttttctgactcCTGTGATCTCATCATCAAATATTGCAATATTATGCAATAATCATCATCCATTACCAGATCTTCAGCCAGCTCTCTTTCCCATCACCAGTGTCTACTCAGGCTGTTTGCTAACTTATATTAAGAGGAAGATGCTCAATAGGGTGTCCCTATAAGAACTGTCATCCATGTAGGCCGGATGGGTCATATCTGTCATTTAGCATACTGGagaagactcattgtccccacaggaaaggtaactgttgtctctgcattttggggagccactccctgctgGGCTAgacttgattagaacaaaggaaatgcatatctgtaaacttgaatagaatCGGCAGTACCATGATAACCAActtttgtctgtgacctggagtaaacctgaaatcaggtgtgtccttaacctgagagaCTTTTCATTCAAGGAAAACACCCACAATTCTACAGGAATATAATGCGGAAACAGAGGGGATTTCGGGACTGCGAGCCTGGGACCCGACAAGGGAACAAGGTTCTgcagtccgctgtttacagtgtattgttttgtcatgtcacaGGACTGCAAACTGTGACCccacaaggggaagcatgtcttgtagtccactgctggcagtgtttcatgttttatttttgattgtttttgtcatgtcgttttcatcatgctgttttattaaaccttttgcttaactttcaattcgacccaagtctctccttcctcctcagaaatcaaacgatcGCGTATTTTAAAATTTCTTAACAGtgtcttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164754 lncRNA downstream 28708 6640881 ~ 6649684 (-) False LOC120569614
TU164758 lncRNA downstream 28708 6640881 ~ 6649684 (-) False LOC120569614
TU164735 lncRNA downstream 48637 6563994 ~ 6629755 (-) True G122498
TU164695 lncRNA downstream 163715 6508987 ~ 6514677 (-) True G122464
TU164675 lncRNA downstream 310503 6367644 ~ 6367889 (-) True G122444
TU164778 lncRNA upstream 3255 6685226 ~ 6685435 (-) True G122508
TU164904 lncRNA upstream 44749 6726720 ~ 6727710 (-) True G122604
TU164903 lncRNA upstream 100522 6782493 ~ 6823002 (-) False pcbp3
XR_005640925.1 lncRNA upstream 332212 7014183 ~ 7035277 (-) True LOC120569626
TU164930 lncRNA upstream 340020 7021991 ~ 7025846 (-) False LOC120569626
XM_039817560.1 mRNA downstream 1327 6670443 ~ 6677065 (-) False LOC120569614
XM_039817552.1 mRNA downstream 1329 6670443 ~ 6677063 (-) False LOC120569614
XM_039817557.1 mRNA downstream 1329 6670443 ~ 6677063 (-) False LOC120569614
XM_039817551.1 mRNA downstream 1329 6670443 ~ 6677063 (-) False LOC120569614
XM_039817558.1 mRNA downstream 1330 6670443 ~ 6677062 (-) False LOC120569614
XM_039817570.1 mRNA upstream 5370 6687341 ~ 6705210 (-) False LOC120569619
XM_039817569.1 mRNA upstream 5371 6687342 ~ 6705210 (-) True LOC120569619
XM_039817580.1 mRNA upstream 73385 6755356 ~ 6759611 (-) False LOC120569622
XM_039817582.1 mRNA upstream 73385 6755356 ~ 6759611 (-) False LOC120569622
XM_039817581.1 mRNA upstream 73385 6755356 ~ 6759611 (-) True LOC120569622
TU164741 other downstream 1362 6670477 ~ 6677030 (-) False LOC120569614
TU164755 other downstream 1362 6670477 ~ 6677030 (-) False LOC120569614
TU164770 other downstream 28086 6640881 ~ 6650306 (-) False LOC120569614
TU164629 other downstream 664197 6012040 ~ 6014195 (-) True G122404
TU164353 other downstream 1754164 4917659 ~ 4924228 (-) False glsb
unassigned_transcript_605 other upstream 462156 7144127 ~ 7144208 (-) True trnas-cga_8
unassigned_transcript_606 other upstream 497106 7179077 ~ 7179158 (-) True trnas-aga_9
TU164950 other upstream 499974 7181945 ~ 7317593 (-) False tmeff2a
XR_005640909.1 other upstream 2116064 8798035 ~ 8803090 (-) False ccnt2a
TU165255 other upstream 2317491 8999462 ~ 9000123 (-) True G122878

Expression Profile