RNA id: XM_039818568.1


Basic Information

Item Value
RNA id XM_039818568.1
length 1804
RNA type mRNA
GC content 0.58
exon number 9
gene id tmeff2a
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 7181931 ~ 7317632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagaccaactCGCTGCGACTCTGAACGCTCCGCACATAGCAAAGCTACAAAGTAAACCGGAGGGACCGCTGCGCTCGTGCAGGAGAGCTGCTCGTCTCACCCGTGGATACTATCACACAACCGCCGTCATCTCCAAACCCTGTCCGTGGgatacctacctacctacctaatcTGGCTACATCCTCTTGAGTTTTACAGTTGTAttacctcctttttttttatcacctcccccccccccccttttttttcctcttctcatcttttcttctccctctcctcatctTTGAGCATCATCCCCTTCTGGCAAGTCGTCTTTGCCTGCCTGGCTAACTTTTCCAGCCTGACTCCATCccacacaacaacaaccaccaccacctcctccatcgCTCACCAACCCCTCGGCAGTTTCCCACCCTCCAGTCCTCCCTCTTATCGCAGCAGCCTCCCTCCCCTGGATCGGGCGGAACCCATTCGGTCAGTCTACACCGGGGGGGGCACtgctacatggggcgcacggtCTCGCACGGAAAATGGTCTGCAGTCGGTATCTAGGCGCCCCGCTGAACCTGCAGGGACTGGAGTTGTCGGAACGGAGTGTCTGCGTCTCTTCCCCGCGTCGCGTGTGCTGTCGTGGCCAGTGAGATATGGGTCTCTCCGCGGCGGCGCAGGCACCGCTCGAGGAGCCCCGGCGGCTGCGCCAGTGGAGCGGGACGGCGGGAGGCTGGCTCCGGATCACGCTCGTCTCGTTTCTCGCCACTTTACCTGTGGAGCAGCTGCGCgccttcccttcctccctcagCGACTGCCAGACGCCGACCGGCTGGAACTGCTCCGGTTTTGATGACCGGGACACGGACCTGTTCTTGTGCGACACCAACGCCTGCAAGTTCGATGGGGAGTGTCTAAGAATTGGAAACATGGTGAAGTGCATTTGTGACTTTAAGtGCAACAATGACTATACCCCAGTGTGCGGCTCCAACAATCAGAACTACCAGAACGAGTGTTTCCTGCGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTACTCATAATGTCAGAAGGTGCCTGCCCTGCTGATGCAGGCTCAGGATCAGGAGACGACGGAGGAGAGGGCTCCGCCGAGGCAGGGCAGAAGGAAACGTCCACCTGTGATATTTGCCAGTTTGGTGCTGAATGCGATGTGGACGCGGAGGATGTTTGGTGCGTTTGCAACATCGACTGTTCCCACATCAGCTTCAACCCGGTGTGTGCCTCAGACGGTCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCCTGTCAGAAGCAGGAACGCATCGAGGTCAAGTACCTGGGCCACTGCCAAGTAGAGGAAAAAGAGGATCCGAGGAACGAGCTGGCCCGCGGCCTGTACATCCCCTGTCCAGACCACTACAAAAACTACTGCGTCCACGGAGAGTGTCAGTTCCCCAGTATTCTGGCCCAGCCCTCCtgcagCTGTCACTCGGGTTTCAGAGGCCCCCAGTGTGACATCAAAGAGTACAACGTGCTCTATGTGGTGCCAGGCTCTGGCAAACTGCACTATGTCCTCATCGCCTCTATCATTGGAGCACTCCAGGTGGTCATCATCTGCGTGGTGGTGCTCTGCATTACCAGGAAGTGCCCGCGGACCAACCGGATCAACCGGCAGAAGCAGAACAATGTCCATTTCAGTACGGAGAACACCATGCGCGCCTCCACCCGGCTTATCTGAGCCcagacacccccaccccccggACAGAGTCCCCTCTCCACTTTATGGAGCGCTGTGGCGTCAGATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164962 lncRNA downstream 45203 7136478 ~ 7136728 (-) True G122644
XR_005640925.1 lncRNA downstream 146654 7014183 ~ 7035277 (-) True LOC120569626
TU164930 lncRNA downstream 156085 7021991 ~ 7025846 (-) False LOC120569626
TU164903 lncRNA downstream 358929 6782493 ~ 6823002 (-) False pcbp3
TU164904 lncRNA downstream 454221 6726720 ~ 6727710 (-) True G122604
TU164974 lncRNA upstream 247582 7565214 ~ 7565430 (-) True G122656
TU164978 lncRNA upstream 305790 7623422 ~ 7624043 (-) True G122660
TU164999 lncRNA upstream 511300 7828932 ~ 7913318 (-) True G122677
TU165146 lncRNA upstream 874292 8191924 ~ 8192187 (-) True G122802
TU165158 lncRNA upstream 996390 8314022 ~ 8316726 (-) True G122814
XM_039818862.1 mRNA downstream 14449 7149302 ~ 7167482 (-) True cavin2a
XM_039818769.1 mRNA downstream 38336 7139032 ~ 7143595 (-) True nabp1a
XM_039818076.1 mRNA downstream 48289 7131034 ~ 7133642 (-) False LOC120569903
XM_039818075.1 mRNA downstream 48289 7131035 ~ 7133642 (-) True LOC120569903
XM_039818074.1 mRNA downstream 55955 7078961 ~ 7125976 (-) False spegb
XM_039817840.1 mRNA upstream 615546 7933178 ~ 8030649 (-) True dnah7
XM_039818782.1 mRNA upstream 714056 8031688 ~ 8053164 (-) True esyt3
XM_039817702.1 mRNA upstream 736683 8054315 ~ 8070677 (-) True parp14rs1
XM_039818853.1 mRNA upstream 760280 8077912 ~ 8084836 (-) False faima
XM_039818851.1 mRNA upstream 760280 8077912 ~ 8084823 (-) True faima
unassigned_transcript_606 other downstream 2773 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 37723 7144127 ~ 7144208 (-) True trnas-cga_8
TU164745 other downstream 499960 6678392 ~ 6681971 (-) False LOC120569614
TU164747 other downstream 499960 6678392 ~ 6681971 (-) False LOC120569614
TU164752 other downstream 499960 6678392 ~ 6681971 (-) False LOC120569614
XR_005640909.1 other upstream 1480403 8798035 ~ 8803090 (-) False ccnt2a
TU165255 other upstream 1681830 8999462 ~ 9000123 (-) True G122878
TU166096 other upstream 5301721 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 7466929 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 7466929 14784561 ~ 14789906 (-) False G123886

Expression Profile