RNA id: TU165233


Basic Information

Item Value
RNA id TU165233
length 4142
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G122863
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 8881443 ~ 8885620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCAGgataaaactttattaatcAATAAAACTTTGCTCTTTGACAAAGATATACCTCAGttattttacataaataaatggtgtTTACATAATCTGTAATACCACGGATGTCATTACTGTACAAACAGACAAATAATTCTGTTACAGTCAGATGTATTGGAAATTCAGTTACAGCGTTCCATGTATgttattttttgtatgtgtgtggctgCATTGCACTTGTAACCGCTGAAGCTGGAAGGGTTTTTACACGCCCATGCGAAGCTTATAGGAACAGATGTGGTTAGTATTGCTATCATAATTTTGTAAAACTAGGTCAAATGAATGGGTTGATGCATCTTCTGGGGCGGTAATAATATATCTATTCATACATACAAGCTTAATTGAATGATACACACATTTTCGATGATTTGGCACAGTTCATCAAGCTGCAGAATTGGACACATTTCTGAGCTATTTCAATAGAACAATGAAATGGATTCAAATACATCATATCACCTGTCAAATGATTAGAGGTTCTGTGTTTGTGCAAATACATGTTCAGAGGTCATATCCTAACAAACCTCTAGCAGTCTTTTAGTGCGTGTGTGGGTTCAAACATTTCATTGGGCCGTAAAAACAAATGGCATTATAGATTAATAAAATGCAACCGCAACTCTGGTGATCATGGAGTTACAGTTATATTCAACATATTTCTTTTGGTATTCAGCTGCTGCACTGACCCTTGATTTTACAGTAAGTGCAACAGCTTCAATGATCACCCATTGCTAAGAAGTGTAAGGGGTCCAGGGCCACAATCGCATCACCCTGCCTAAATTCTATGTAGCGTGAATGTGCACAAGAGAAAATGACACGGAAATTAAACAAAGTGCAAAGAAGAGAGGTAGAAAGGATTTCGTTGCCAAGATCAAAAAAGTCATCTGAACACAATATAGTTAACAATATGAGCAATAGAGCAAGTAAAGCATACCGTTTCAAAGAGTTATGACTTTGTTCTGTGCCTCATGTGGTGGGTATTTGCATGTAAACACTGTGCTTTGCTAGTAAAAGTCATTGTAACGATTGTCTTCTATGCATCAGAGGGGGAACATTACAAATCACTGTGCTGTTGGTGAGTTGAAGTGGTGTGAGCCGATTCACACCTTCAGTTTAGAGCTCAACCTTCACAATTCTTCACACAAAGAAACTAAACTAAAGATAATATACCAAGAAAGTTGCACCTTGTCCAGTATGTCAACAGACAGTTGATAATTACAGTGCAGAGTGCATGTAGGTGCCTTCAGAATCACTGCCCAAGGCTTTGTAGCTGTGTTCAGTCTGGGATAAATTTAGACTCCCTCCCTCGGATCCAGTGCGCTGAATACTAATCACAGCTCTTGTCATGTGGCCTCCTACCATGAGGGGGCACACAAGCACTCTGGATCCACATTTACAGGGAGAAACCAGGCCACAATGTCTATACAGTGTACACAGTTTACCTCACTTTAAATAGTGAATATGTATTTTTGGTCATGAGTAGCAAGCTCATTTAATGTCCGTGTGTGTTTGCGCATTACACAACATCTATGAATTATttatatcaatgcatttttttatttgattgatCTCCATACAGTTGTACAAAATCAATCCATAAATTGAACTCCTTTCCTTAATCTAATTGCTCGTTTGGGGTTGTGGGGTTTCTGATGCTTCCTGACAAAAGTATTTTTATCTCATTTTCTCTAAAAAATGTTCTGGGTGATTTTGGAGCGGAGTTTATGACACCCACTAATGttcagtaaaaaaataatactgaTTGGTGCCGGCAGGTAAGTTGTAGCTATCCCATTTTAACATGTACAATAATGATTTAATTGGCAATCAGTTCTTCTTTTGACAGCTActaataaatgataaaaaagcctCGGACAGCGCTGTGAGATCCCACCTACATCCAGTCTGAGATTTTCACTTAATGCAAAAATGTACAGACAGACTTATTTAATTTCACCAATAATCTACAGTAATATGTAAAACCACATTTACAGTATAAGCACTATAGAGTAAACATGTGCAACTATATGTAACATTGATCCTCCTGTACTTAAACTATATGTCTACTCCAAAAAGCCTTTAATATCGGCCATAAAGTACTACGACTATATTTGTGACGTTTTGTTACTGATGCACCCGGACAGTGTAATAAACATATTTACAGACTGTGTGGTTTGCATTTACATTCTGTTCGTTGTACATAACAATGGATGATAACAATGGTACCATGCAGAACAAATGAGGTATAAGCAGGTATGTGACATAAGGAGAAAGCACTGTCTCTGCAAATGATATGCCATGAAAATTATATTCACACAGGCTACTTCATCTTTGTGATTGTGCTTTGTATCATCTTAGGTTTGAGACTTTGTCTTATCCAACTTTCCGCATGAACTTTGCAgtcaaaacaagaaaaaaagaaaacatggatAAATTAATGTCAATGAAAGTAATAAATATCCCAGCTAGATTGAGTTCAACATTACATAGAGAAAATGATAAATAGGATTACAGCAAATGCCAGAGACGTTCCTGCAGAGTTTAGTGCTTTTACATCTATTAATTATAAGCGTGACAAGATgttacaacaaaaacacaagataAACATTAAGATGCGTTTACATCTTACCCTTAAAAACGTATTTCGCTATTCTTCAGATGCTAGCTATTGCCCGGTAAAACTTTGTCAAAGTAAGTCtcgagtaaaaaaacaaaagatgctGAATGGAGTTCGGTAATTAACTCAGTCAGGTATTTGGGTTTAGGAGATCAACCAAAAGATATGTACAAAATATGGCAATGAAACCTATGCAAAGTCAGATACACCGGTCAAATCATGTCTTAGTTTTTAATTACCCATTGTGTCAAAACGGGCACTGTGCTAAACTGTCAGCAACATACACCAGCGCCGAAGTTCGCCAATTTGTGCTTGGATACATTACTTACAGTACAGTAGGCTATGCAATGTATATAAATGACGTGTGCACTTTAGGTTTATAGCCATCATATGGCAAATGTTTGTCCTCAGTGTCTCCTGTGCTCTTTTACAGATTTTACCTTTTAGCGGTAGAGTGTCCAGATAAAGACTGACCTCACCATGCTCTATGATGCTTTTCACCTTTTGGACATAGCAGTGTTTGCTGACTCAGAACTGCTCATACGCTCTCTGTCTAAGTCCTCTTTTCCCAGCTTTCCACGTCCTCTCCATCTCTCAGCAACGCATTAGGAGGTATAGTGGCTGCTTTAAAGAGGGGAGGCTGGTGAGGTTTTGACAGGAATGGATTTAGGAAAGGAACACCTGCCCTTAAcaataaatagaaaaacaaaacaacaaccttAAATTATAGTGAGCAGCCCTCAGCTCAACTTGGAGTTTGTATTTAAGATACAGTAGGGAGACAAAGAAATTCCTGCTAAATAAATTATGGGGAAATgtactgtgtgttttgtgtaggCCTCATTACAGTAAAATCTACCACCATTTGGTAATTTTTGATTTTGATCCCCATTATGTCCACCATGCCAATAGCTGAACCCACAAGGACAAACCAATACACTGTTGTCTCTTGTGTTATAACTGGTGAATGTTGTTATCTAAACAGCGACTGCTGGATCCCCAGGTCGAATAAATCCAAAGCTCCTGCTGGTAGACAGGAGTCTCAGCTCttgggcattttttgtcatttttgaaaTGGTGGTTTTAATGGACAAAAAGTAAAGAAGGGCAGAACAGAAGAATTTCAATGTTTTCTCTCCAAGATGTGGTCTTCAATCACGTCCTTTTTCCTCAAAGTCTCTCAGTTGCTGCatttgtgtatgcatgtgcatttttttctgtctgaatGTATGAATGTACTATGTACAGTTTATAcagcatgtgtatatatatatttgtgtgtatgggAACGTGTAGAGTCTGTATGTGCTGCATGTGTATTAACGTGTGTAGgaaggacagagagaagagggcgGAGGCAGccaggtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtttgaacctGCTCGTCTGGccaacacacactctcactcaaaGCGTTCGTAGTTCCTCGTCTGTCTCACACGGGGCACCATGTCCTTCAGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165228 lncRNA downstream 90545 8790664 ~ 8790898 (-) True G122859
TU165227 lncRNA downstream 90887 8790317 ~ 8790556 (-) True G122858
TU165200 lncRNA downstream 157861 8679334 ~ 8723582 (-) False G122838
TU165199 lncRNA downstream 198013 8647857 ~ 8683430 (-) True G122838
TU165188 lncRNA downstream 268749 8604526 ~ 8612694 (-) True G122830
XR_005640855.1 lncRNA upstream 119709 9005329 ~ 9005993 (-) True LOC120569286
TU165343 lncRNA upstream 331190 9216810 ~ 9287702 (-) False G122934
TU165345 lncRNA upstream 331190 9216810 ~ 9287702 (-) True G122934
TU165364 lncRNA upstream 438780 9324400 ~ 9324800 (-) True G122950
TU165366 lncRNA upstream 442141 9327761 ~ 9330473 (-) True G122952
XM_039817531.1 mRNA downstream 70857 8804375 ~ 8810586 (-) True acmsd
XM_039817530.1 mRNA downstream 78339 8798027 ~ 8803104 (-) False ccnt2a
XM_039817529.1 mRNA downstream 78353 8798027 ~ 8803090 (-) False ccnt2a
XM_039817526.1 mRNA downstream 78356 8793621 ~ 8803087 (-) False ccnt2a
XM_039817525.1 mRNA downstream 78356 8793621 ~ 8803087 (-) False ccnt2a
XM_039817175.1 mRNA upstream 2243 8887863 ~ 8901784 (-) True LOC120569317
XM_039817136.1 mRNA upstream 148292 9033912 ~ 9122327 (-) True pth2ra
XM_039818573.1 mRNA upstream 260972 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA upstream 260972 9146592 ~ 9175548 (-) True mrasa
XM_039818128.1 mRNA upstream 490909 9376529 ~ 9474838 (-) False LOC120569925
XR_005640909.1 other downstream 78353 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 1563850 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 1702285 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 1737235 7144127 ~ 7144208 (-) True trnas-cga_8
TU164747 other downstream 2199472 6678392 ~ 6681971 (-) False LOC120569614
TU165255 other upstream 113842 8999462 ~ 9000123 (-) True G122878
TU166096 other upstream 3733733 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5898941 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5898941 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 6098865 14984485 ~ 14993789 (-) True G123960

Expression Profile