RNA id: TU165343


Basic Information

Item Value
RNA id TU165343
length 1125
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G122934
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9216810 ~ 9287702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATTTCATGACACAGGTAAGAAGGTAACCAAGGGTATAATACGGTAAAACATTTCTCATTATTTGGGGTTTCATTATATATACACTCGCCGTTATAGATTACGTCTCAaataaaacaacctttttttttttttttgaaatagcAGTCTTGAAATACACACCATTTGTGTCACATTTGAGTCAtctaaaaaggaaaagaaaaatcaaaaatcaaataaaaacaaaatctttCTGCTCACAAAtgattttcccttttattttaaagatttttttttcatatacaaCATTGTATTTACATGGTCTAATATTATTTACACAAAATTAACAAGTGGCACTGTGTAGTTAGGACTTCTTTTCTCGTTCCCTACAGGTcttatttttaaacaaaagaaaaatgacaaaaaaaagaaaatagaacaACTCATTTTAACAATGCTTTTATGTCtccaactctcttttttttcttcttctcattaGCACTACCTGCCACTCAGCCTTCTACAAAGTGCTGTCCTTTCCCTACCCAACTAAAGCCGTTTTcatctttacaaaaaaaaaaaaaaatctactaaCAAGGGCCCTCCCCATGTCTGGTCCCCTCCAAACTACCTTTGATCAGTACCCTAAACGCACACAGACATTACGAATTATGtgtcaacaacaaaacactttgAACATAGACAGCTCATTCTGGACATTTTGTCTGACAGCCCTGATTGATCAATGATTAACTTTTCACTGCGGGGGCCCAATGCTTATTTTCTTGTTGAAATTGTCATGGTTTTTTTTGAACTTGTTATTGGTGCCACTTCAATTTCAATTTGATGGTCATTTTGCTGAATCCAAAAACCGATGATAAGAAGCCACTGGGTGCTCAATggttgttcttttgcttatgaGCTCATACATGTAGGGGCTGCCAACAAAACACGTTTACACCAGTTATTCAGTCATTCACTGGCTACCCTCGGTTTGTCCTATGAAAACGAGCTCGATACTGCACTATTGTGCCCATGATATTCTGCTCAGATGTGTCATTTGCCTTGAGGCCatgcagagaggcagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640855.1 lncRNA downstream 210817 9005329 ~ 9005993 (-) True LOC120569286
TU165233 lncRNA downstream 331190 8881443 ~ 8885620 (-) True G122863
TU165228 lncRNA downstream 425912 8790664 ~ 8790898 (-) True G122859
TU165227 lncRNA downstream 426254 8790317 ~ 8790556 (-) True G122858
TU165200 lncRNA downstream 493228 8679334 ~ 8723582 (-) False G122838
TU165364 lncRNA upstream 36698 9324400 ~ 9324800 (-) True G122950
TU165366 lncRNA upstream 40059 9327761 ~ 9330473 (-) True G122952
TU165405 lncRNA upstream 345802 9633504 ~ 9641776 (-) True G122983
TU165407 lncRNA upstream 535482 9823184 ~ 9823594 (-) True G122985
TU165408 lncRNA upstream 536215 9823917 ~ 9824186 (-) True G122986
XM_039818573.1 mRNA downstream 41262 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA downstream 41262 9146592 ~ 9175548 (-) True mrasa
XM_039817136.1 mRNA downstream 94483 9033912 ~ 9122327 (-) True pth2ra
XM_039817175.1 mRNA downstream 315026 8887863 ~ 8901784 (-) True LOC120569317
XM_039817531.1 mRNA downstream 406224 8804375 ~ 8810586 (-) True acmsd
XM_039818128.1 mRNA upstream 88827 9376529 ~ 9474838 (-) False LOC120569925
XM_039818126.1 mRNA upstream 88827 9376529 ~ 9474838 (-) True LOC120569925
XM_039818127.1 mRNA upstream 99580 9387282 ~ 9474839 (-) False LOC120569925
XM_039818129.1 mRNA upstream 106134 9393836 ~ 9474838 (-) False LOC120569925
XM_039817957.1 mRNA upstream 237039 9524741 ~ 9773383 (-) False pard3bb
TU165255 other downstream 216687 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 413720 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 1899217 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 2037652 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 2072602 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 3331651 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5496859 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5496859 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 5696783 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 6129498 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile