RNA id: TU165366


Basic Information

Item Value
RNA id TU165366
length 2687
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G122952
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9327761 ~ 9330473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGTAGCAAAGCTTTACTGAATCATGATCAGGTATTccagaaaaaaataagtttatATAAAATTGCATTTGAGAGGTCACAATCTGTTTTTTTCCAGTCAGTTTCCTACTTCTTTTGTAATTAGAAAACACCTCAATGCAGAAATCTTCTCAGTGTGTAGTAACAATACTGCCAAcataattttcaaaaaatatatataaatctaCTTCATATCTACAGCCAGCTGATGCCATTACACTGACAATACATCATAACTGTATGCTACAACACTTTTGGACAACATGTAATATTTTGAACAATTACACTGAGTAGTAGCATAAATAACTGTCACTGCTAAGAAGACATTGTAAAACAGTCAGCTTCCCTTGTTCAAGAATGAAATCACCATCATAATGAAAAATCTACAGACATAACTTGAATGAGGGTCCAGACTTACATTGGATGGGGTAAtgagatgggaaaaaaaaatgtagaattAGGCCTCAATTTCACATGTACAAAATCTGATTTTAAGATATTTCACAGGTTTTCCTCTGGTTACAAACTATAACAGCCATTGAGAATGTAACAACTTGTACACCTTTTTATTCTGTGGCATCTCCAGCTTTCTCAGATGAGACTATTTGAATACATTCATTTCTATAAGGCAGGGTAGTAGCTGCAGCATGTTAATACCAGGAGCCCTGTTCTACTGTATAACAAGGTCAGTCTACTGTCTAAAATGAATTCAGATATCCAGTTAGGTAATAAAAAGGTTGTCAAAAGTGTTGATACTTTGATACGTGTTCAAAACGATACAatctctgtaaattatacatATGATAGTATTGAAAATACTGAagctatatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtaaaaaagaagaagaagaaaaaaaagacagatcaACAATGAGATTTTCAGCCCAAGGCTGCACAGATGAAACAAAGGTAAAGAAAATAAACTGGTCCTAAACCTGTGTCTGTTACGGCATTCTCTCCAGCAACATAAACAAGTGAAGCAtgaacaaattaaaaataaaataaaatactaaaaGCAATAATGACAATGTGTAGGCCTGCAAGGTAGTGAATTTAAGAATAGTAACAATAATGTTAATTgatgttttaaatttttacaaATGTGTTGGTATGTGTTTAGTGACTTTTTCCTGTAACGGCACTGTGTGCAGGTTgttaataacaaaaacattttaataaaaaaatgatccTGTTGGTATTTAAGTATCCTGTATCCCTGGAAACGGTGTCCACCTTCAGGGGTCATAGTTAACTTAAAAGGTTTTAACAGCAATTGAGCCGCCTTTTGCATTTACCTAGCCAATATACTGTAGAAGTTTAAAGTAGTGTGAATGAGAAACTGTCACAGGTAGAGGCAGTgctttcaaataaaaacatagaGGGACACATTTTAGACAAAATGGTAAAACTTCAACTTCATCATTGTGTAGTCATCTTTCTctcaaaatattaaaacatcaaaaaagtAAGAGCAGGATAATAAAAACATCGGTTGAAAAACCAGTGTAGTCACCTCTATTGTCATCcattgcaacaacaacaaaaattaaaGATTGACGTAGGCGAAGATTTAAAATTAAAGATTGACGTAGGCGAAGATTTAAAATTAAAGATTTTAAGGTCCAGCGTTTATAAAAACTAATCCAGTAAAGTTTACATATCCAGTGGCTGCCAACAGACACCaaaaaaaaaaaaaaaaaaaaattgtagtgTGCTACAAGGACAGTACAGTATCATATTCACGTTTCATCATGTTAAGAGTCCAGGGCATTTTATCTCTTAGAATCaacatctttcttttttatagGTTTTTCTTTTTAGTCCTTCATCCAGTGTACCTCAGCAGCTCTACATGCTGTGTGATCTGTGCGTGTACACAAAAGCTCAGAGTAGCAAAGATCCAGTGGTGTGAATAACCAGTGATAAAACAGCAAGATTCAAAAATGGGGGAGGAAAGCAGCACTAAAAGAGACAACCTACTCCTGGAGTCGTAAGCCTTATGCTTTTACGCAACGTACCTTACAGTGTCATGCCATTCTCTTGTGTCAGTCCCAATTTGCCCTTTGTAGCAAACAAGTTGAATAACAAGACTTTTCATCACTTGTCATCTACAAGGAGATGGTGCTAGGTGTTATGAGAGACTGAGGTGTGGTCGACTGGATGGATTAAGTAAATTGCAGGTCACTGATCGTGAACTCACACCGGAGGTTCACAAGTTAGGTGTTCTTAAGATGGCAATACTGGAGCTAAAGGTTTGTTTTAACTGTTCTACAAAAACTAGGCTTTGTGTCATGTtatcgtgaaaaactgtaatcatgtttctaatattttccAGTGTACTTAGTTTAGTTTGTTCACTCAGTGTCAGTGTTGGTGAAATTAAGTTTGTGGTGTTTGTAAGCTGCCTCTTCCCTGGTTCCACTTTCCGCTTAGCCCTCAGTGTTCAGCACACCTGGCCCAGCTTGCTTGTGTGTGGATGGGTGAGGGGGTGAGGTGGGGAAGCGATCAGGGATTTGAATGTTGTGatggctcctcctcatttctcCATCAGAGCTCAGTGGTCAGGAGACCTCTGGGTTTGGCCCCATCGTCCGAGGCTGGCTGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165364 lncRNA downstream 2961 9324400 ~ 9324800 (-) True G122950
TU165343 lncRNA downstream 40059 9216810 ~ 9287702 (-) False G122934
TU165345 lncRNA downstream 40059 9216810 ~ 9287702 (-) True G122934
XR_005640855.1 lncRNA downstream 321768 9005329 ~ 9005993 (-) True LOC120569286
TU165233 lncRNA downstream 442141 8881443 ~ 8885620 (-) True G122863
TU165405 lncRNA upstream 303031 9633504 ~ 9641776 (-) True G122983
TU165407 lncRNA upstream 492711 9823184 ~ 9823594 (-) True G122985
TU165408 lncRNA upstream 493444 9823917 ~ 9824186 (-) True G122986
TU165413 lncRNA upstream 498958 9829431 ~ 9832190 (-) True G122990
TU165465 lncRNA upstream 579987 9910460 ~ 9910997 (-) True G123029
XM_039818573.1 mRNA downstream 152213 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA downstream 152213 9146592 ~ 9175548 (-) True mrasa
XM_039817136.1 mRNA downstream 205434 9033912 ~ 9122327 (-) True pth2ra
XM_039817175.1 mRNA downstream 425977 8887863 ~ 8901784 (-) True LOC120569317
XM_039817531.1 mRNA downstream 517175 8804375 ~ 8810586 (-) True acmsd
XM_039818128.1 mRNA upstream 46056 9376529 ~ 9474838 (-) False LOC120569925
XM_039818126.1 mRNA upstream 46056 9376529 ~ 9474838 (-) True LOC120569925
XM_039818127.1 mRNA upstream 56809 9387282 ~ 9474839 (-) False LOC120569925
XM_039818129.1 mRNA upstream 63363 9393836 ~ 9474838 (-) False LOC120569925
XM_039817957.1 mRNA upstream 194268 9524741 ~ 9773383 (-) False pard3bb
TU165255 other downstream 327638 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 524671 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 2010168 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 2148603 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 2183553 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 3288880 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5454088 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5454088 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 5654012 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 6086727 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile