RNA id: TU165736


Basic Information

Item Value
RNA id TU165736
length 1591
lncRNA type sense_over
GC content 0.36
exon number 2
gene id stxbp5l
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 10940053 ~ 11094619 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtttgtgagagagagagagagagagagagagagagagagagagtgccaCAGATGTTAAAACAACTGGACTCTTTCTCTTCCAAAGCAATCAAACATGAATGACACCCTCCCATCTCTCAGCCTCAGTCTTTTAGAAGTTGCGGTTCATGTGTGTTCAGGGTTAAACCTGAGCAGTTCTCTTTCCATAATCACAAACAATAATTTTAAATGATTGTCAATGTCTTTGTGGCGGCAGTACAAAGAGGAGTTGGAATCACATCCGCTTAATTGCTACCAACTCCCTTGTGAGTCGTTTATCAGTAAAAGGTTCAGGAGaagtaacagtatttttttttcagtgatgtTCCGATGTGAGTCAGTGACGAAACTATGTACATGTGTAATACATTTGCAACAATTTCAAATGAAGGCAAATATGTTCTTTTTTTCGTTCAATATTGTTCTTGATGACTATGGTATCCTCTTGTCCTAGTCTTATATTTGATGGTGACGGCCTTTCAACCGAAGGCTCTTGTATgtttaaaacaacaaatgttcCATGATACATGGTTGTGTATCATATTGTGATTGTGTTGTACATGTCAATGGGTAGCCACATGACACGGGCAAACAACCTTAACTGAGGAGGATATTTTGTacttgtgtatttgtctgtACTTTGAATTGATCTGAAAAACCAAACAGGATTATTGATATCCATTTCTCACACATCAGGCCTTTATGCACACGAGCATTAACACACATAAAGCGTTGCGCCTTGATCATGTTGACGTCACTCCCACATAAAACATGCACAGCGACACGTACActcaaaacctaaaaaaaaaaaactagtgaATCTATCTGCATTACTAGCATAGACTAGTCATTTCTGCCTGCTCCCTGTCAGGCTGCAGAGGCATTACTTTAAACCGATTTGTTTTCACCAAACCCAAATCGCCTGACATCCTAAATCAGTGCCACGCAGATTTCAGGAATTACACATGATTTGATTCAATTAGGTGTCTTAAACgtgaaaaaaatgaatttcTCTCCTATCTCTGTGCCGTCAATGAGATTTGTGTTCAGTGCAGTCCTTTTCAAtggcagagaaaacacacataaaaacaaaaaaaaaaacacaaccaaaataaaataatttaaaaaatatctgaCTTCTACTTACAGGGTGTTTTGTTAGtacgtttttttgtttgtatgtttttggGTTTTTATTAATTGTACAGTTCAATCTTGAGAGAAAggtgaaacaaacaaacaaaaaaaaaacgataaaaaaGATAAAGACATTCTTGGGATATTTTTCTCTGTATATGTTGTACCTGTTAATGCTGGTACTGTACTATCTGGTATTCTGGCTCTGTCTAAATCACTGGTAGTTCTTCACACTGTAGTAtcctgaagaaaaaaataattctctGGTTTTCGCAATGATGGCAGCAAAGTTTGTCTTATTTAAATGGATTCTACCACTTTTTGTTCTTATTGATATTATACTAGTGTAATAGAAATTACTTGACAAAAAAAGAACTGAAAAATATGTTGATGCAAAagcaaaatgaaataaacattGATTGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165637 lncRNA downstream 64973 10822765 ~ 10875080 (-) True G123160
TU165617 lncRNA downstream 157545 10709001 ~ 10782508 (-) True G123142
TU165620 lncRNA downstream 176137 10757843 ~ 10763916 (-) True G123145
TU165606 lncRNA downstream 267375 10672309 ~ 10672678 (-) True G123131
TU165605 lncRNA downstream 271419 10668347 ~ 10668634 (-) True G123130
TU165753 lncRNA upstream 141689 11136609 ~ 11137071 (-) True G123232
TU165813 lncRNA upstream 285768 11280688 ~ 11281039 (-) False thsd7ba
TU165820 lncRNA upstream 539204 11534124 ~ 11534342 (-) True G123286
XR_005640937.1 lncRNA upstream 545907 11540827 ~ 11544518 (-) True LOC120569662
TU165828 lncRNA upstream 553583 11548503 ~ 11548704 (-) True G123290
XM_039818849.1 mRNA downstream 1152 10929938 ~ 10938901 (-) True poglut2
XM_039817219.1 mRNA downstream 11030 10926558 ~ 10929023 (-) True tex30
XM_039818069.1 mRNA downstream 14490 10921003 ~ 10925563 (-) True nepro
XM_039818070.1 mRNA downstream 14499 10921003 ~ 10925554 (-) False nepro
XM_039818071.1 mRNA downstream 24651 10901845 ~ 10915402 (-) True ralba
XM_039818171.1 mRNA upstream 122667 11117587 ~ 11129913 (-) False gtf2e1
XM_039818170.1 mRNA upstream 122667 11117587 ~ 11129912 (-) True gtf2e1
XM_039818172.1 mRNA upstream 139061 11133981 ~ 11136197 (-) True LOC120569949
XM_039818889.1 mRNA upstream 145528 11140448 ~ 11146459 (-) True LOC120570501
XM_039818547.1 mRNA upstream 189125 11184045 ~ 11196937 (-) True spopla
TU165255 other downstream 1939930 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 2136963 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 3622460 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 3760895 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 3795845 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 1624433 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 3789641 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 3789641 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 3989565 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 4422280 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile