RNA id: TU165876


Basic Information

Item Value
RNA id TU165876
length 1277
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G123323
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11845673 ~ 11846949 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attggaaagtttgtaagtacaccaggagacaagttataattgaggtaagtttggagacactaccttatgtaatcattaaattaataaatatttttgttgcatctctttttggtgttgtagtttgaAGACGGTCCccaagcactcgtcttactgccgatagaagtagcagcagagagcagaagccatcTGGCaagtgtttattaaacaaactcctggtgtacttacaaactttccaatgccttgttttatgagtacagaacctatttgtactactgtagaagtttggtatcatttcgggcattattagtggagGCATTTACAAGATACACCTTTGGTTCCATTAGCACCTGCACTAAGCCATTTGGTTGATAGTGCTAACTCACCCAATGTAACACCaagggaaaaaagcttctggggggtggggaggggtgtttggctcgaggtcatggtgcaaaagaccctagggtgaaattactccaaaccatcactttaacattaaATCAAATGGCATTCTAGAAATGTGAAAACGTGGCTGCTACTACTTCTGAACCCACTGAAAAGGAACAAACTACTGTAGCTTTTTACCACTTTCAACTCATTGCTTTGGTTAAACTGATTCAATCCTCCCAAACAAAACTATAAGCAGCTGTGCCCAGCACTTTATCTCAAATGTGTTGATACTTCCCCCAACTCAAAGTGGTTGAAGATATTTCTTCCAGGATAAAAACCAAACAGGATAAAAATCCAAGTGAATATTGGAATTACCCTGAACATGTGGAGAACAAGACGACTCTAACGGGTTACCTATGTAGCCCTGTGTTGCATGGATGTGTAGTGAACACCTTAAACATAACAACTGGATGCGCCAGCGCTACATCAAGGCTCTGCTGCTTTAAATCtctgccacctagtggtccgaAATTGCTTAACGCAGCTTTCAGAATCAGAGTAGCAAAAACATTTGGTTCTAGCAACTCATCTGTACGGACAAGTATTGTAAACGTTTAAGGAAAGGTTTCGTTAAGAATGTACTACATTCATTTTTCCAAACTAGCTAAAAACTAACAAACCAAATAATTCTCGATGCACACTGAAAGATAGAGAATGTCAGGCAGGGTCACACATGTAACCTCAGCCCCCAGACATGGGTTGTCCCAAATTCTAGCTTGCATCCAGAGCTTATtacaacagacacacagcttttaaaaaggaacacgctgacttattgggactttagcttattcacagtaagccccagagttagacaagtcgataca

Function

GO: NA

KEGG:

id description
ko04216 Ferroptosis
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165872 lncRNA upstream 208 11843380 ~ 11845465 (+) True G123322
XR_005641050.1 lncRNA upstream 210881 11618607 ~ 11634792 (+) True LOC120570367
XR_005641051.1 lncRNA upstream 219139 11618596 ~ 11626534 (+) False LOC120570367
TU165812 lncRNA upstream 420422 11409670 ~ 11425251 (+) True G123279
TU165794 lncRNA upstream 585031 11258987 ~ 11260642 (+) False LOC120570060
TU165877 lncRNA downstream 108 11847057 ~ 11847386 (+) True G123324
TU165953 lncRNA downstream 160724 12007673 ~ 12013200 (+) True serp2
TU165958 lncRNA downstream 167823 12014772 ~ 12016505 (+) True G123374
TU165968 lncRNA downstream 267098 12114047 ~ 12115217 (+) False G123384
TU165972 lncRNA downstream 267098 12114047 ~ 12213222 (+) True G123384
XM_039818676.1 mRNA upstream 7069 11743335 ~ 11838604 (+) False asic4a
XM_039818675.1 mRNA upstream 7069 11743336 ~ 11838604 (+) True asic4a
XM_039818729.1 mRNA upstream 237596 11597874 ~ 11608077 (+) True gmppaa
XM_039818730.1 mRNA upstream 237596 11597874 ~ 11608077 (+) False gmppaa
XM_039817661.1 mRNA upstream 250166 11587008 ~ 11595507 (+) True pnkd
XM_039818841.1 mRNA downstream 11503 11858452 ~ 11867638 (+) True LOC120570467
XM_039818837.1 mRNA downstream 22288 11869237 ~ 11899174 (+) False agpat3
XM_039818840.1 mRNA downstream 23200 11870149 ~ 11899174 (+) False agpat3
XM_039818838.1 mRNA downstream 31101 11878050 ~ 11899174 (+) True agpat3
XM_039818839.1 mRNA downstream 34456 11881405 ~ 11899174 (+) False agpat3
TU165581 other upstream 1226977 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 1916782 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 1920833 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 3048927 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 4696634 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 1202809 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 1506357 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 1788637 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 2386383 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 3291528 15138477 ~ 15155886 (+) False trpm2

Expression Profile