RNA id: TU165914


Basic Information

Item Value
RNA id TU165914
length 1236
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G123341
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11845610 ~ 11847383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataagtcagcgtgttcctttttaaaagctgtgtgtctgttgtaATAAGCTCTGGATGCAAGCTAGAATTTGGGACAACCCATGTCTGGGGGCTGAGGTTACATGTGTGACCCTGCCTGACATTCTCTATCTTTCAGTGTGCATCGAGAATTATTTGGTTTGTTAGTTTTTAGCTAGTTTGGAAAAATGAATGTAGTACATTCTTAACGAAACCTTTCCTTAAACGTTTACAATACTTGTCCGTACAGATGAGTTGCTAGAACCAAATGTTTTTGCTACTCTGATTCTGAAAGCTGCGTTAAGCAATTtcggaccactaggtggcagaGATTTAAAGCAGCAGAGCCTTGATGTAGCGCTGGCGCATCCAGTTGTTATGTTTAAGGTGTTCACTACACATCCATGCAACACAGGGCTACATAGGTAACCCGTTAGAGTCGTCTTGTTCTCCACATGTTCAGGGTAATTCCAATATTCACTTGGATTTTTATCCTGTTTGGTTTTTATCCTGGAAGAAATATCTTCAACCACTTTGAGTTGGGGGAAGTATCAACACATTTGAGATAAAGTGCTGGGCACAGCTGCTTATAGTTTTGTTTGGGAGGATTGAATCAGTTTAACCAAAGCAATGAGTTGAAAGTGGTAAAAAGCTACAGTAGTTTGTTCCTTTTCAGTGGGTTCAGAAGTAGTAGCAGCCACGTTTTCACATTTCTAGAATGCCATTTGATttaatgttaaagtgatggtttggagtaatttcaccctagggtcttttgcaccatgacctcgagccaaacacccctccccaccccccagaagcttttttcccttGGTGTTACATTGGGTGAGTTAGCACTATCAACCAAATGGCTTAGTGCAGGTGCTAATGGAACCAAAGGTGTATCTTGTAAATGCctccactaataatgcccgaaatgataccaaacttctacagtagtacaaataggttctgtactcataaaacaaggcattggaaagtttgtaagtacaccaggagtttgtttaataaacacttGCCAgatggcttctgctctctgctgctacttctatcggcagtaagacgagtgcttggGGACCGTCTtcaaactacaacaccaaaaagagatgcaacaaaaatatttattaatttaatgattacataaggtagtgtctccaaacttacctcaattataacttgtctcctggtgtacttacaaactttccaatgccttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165907 lncRNA downstream 192 11843330 ~ 11845472 (-) True G123340
TU165906 lncRNA downstream 192 11843411 ~ 11845472 (-) False G123340
TU165856 lncRNA downstream 246162 11597946 ~ 11599502 (-) True G123310
XR_005640938.1 lncRNA downstream 248958 11593181 ~ 11596706 (-) True LOC120569667
TU165828 lncRNA downstream 296960 11548503 ~ 11548704 (-) True G123290
TU165909 lncRNA upstream 174 11847073 ~ 11847383 (-) False G123341
TU165926 lncRNA upstream 30440 11877339 ~ 11899170 (-) False G123348
TU165925 lncRNA upstream 36065 11882964 ~ 11899170 (-) False G123348
TU165924 lncRNA upstream 44300 11891199 ~ 11899170 (-) True G123348
TU165936 lncRNA upstream 107024 11953923 ~ 11956600 (-) True G123356
XM_039817662.1 mRNA downstream 258591 11581030 ~ 11587073 (-) True LOC120569666
XM_039819012.1 mRNA downstream 377725 11280610 ~ 11467939 (-) True thsd7ba
XM_039819127.1 mRNA downstream 568958 11270196 ~ 11276706 (-) True LOC120570648
XM_039819128.1 mRNA downstream 576812 11262358 ~ 11268852 (-) True LOC120570649
XM_039817107.1 mRNA downstream 609944 11228607 ~ 11235720 (-) True LOC120569285
XM_039818836.1 mRNA upstream 590 11847489 ~ 11853239 (-) True chpfa
XM_039818574.1 mRNA upstream 81102 11928001 ~ 11931566 (-) True LOC120570301
XM_039817933.1 mRNA upstream 167874 12014773 ~ 12023501 (-) False LOC120569817
XM_039817932.1 mRNA upstream 167874 12014773 ~ 12019154 (-) True LOC120569817
XM_039817931.1 mRNA upstream 199607 12046506 ~ 12050719 (-) True LOC120569816
TU165255 other downstream 2845541 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 3042574 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 4528071 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 4666506 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 4701456 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 772454 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 2937662 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 2937662 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 3137586 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 3570301 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile