RNA id: TU165925


Basic Information

Item Value
RNA id TU165925
length 2857
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G123348
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11877339 ~ 11899170 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTGATTACATCCTTTAATATTCTCAAGTGTTTAAATTgaagaaaacataaaaatagcCTTAGAAAACAAAACCTGACACAAGAGGTGCAACTAACTCAATTATCTTTAAGAtttaaaaatgccattaagTGGTGTCAATCTGTAAGTTTGTTATTTGTTTACATTGAGGACCTCAGAAAACACAACCACAAGTTACGGTTATATTTCTTTACTGAATAAAAAACATCCAGTGTAGAAAAGTGTCTAAACGTCTCAGCATCCTTTCTGCTTTGGAATATGAGGTTTACTGAATGACAGGAAGAGTTTGACTGCATTGGTAACTGATCAGATCTCTTGAGGTTAAAGATAACAGGCCAAGATAATAAAGcttttaacaaatattaaaacaaCTCTAAGTATCTTCTTGTAAAAATGTGACTTGATTACAAACAGAACTGTGACAGCAGACTTTATCAATTCTCTTTAGTGGTTATTGTTTAAACTTTAGAACAAGCTGTTTGGCAACTAACCCCAGCAACTTGCTTGCTATACCAAAGGAcgtttttcaattttcaatcCTTCACTACCACAGGGACTCCGTTAGCTTctacattttcacacaaaagTTAAGCAGCACGGTCTATTAAGGCTTGCATGAATCTGTCTGGGTTGAGATAACTCTACAGAGAgatgaagtacacacacacattgctgcGGAGTGAAAAattaaaaccaacaaaatataTGATTAACGCTACATGTGGCACggaaggaggggtgggggtggggtacCCTCCATGTCTTGCTACCATTGTTTGCATTTTGGACCAGGAAACGTGGCTTTAAACACTGGAAGAGATGCACTCAAGTACTGCAGCAGCCAAAGTTTATTTCTTgcagttaaaaacaaaccaactcTGAGATGACCGATTTTAACCAGTGAAATGTATGGAGCTGTGCACCTACAATGGCTAGGACATCCAGAGAAAAGCTGCCTGCACACAATGTGAAAGCAGCTTTCTTTAACTAACGACTATGTACAGGTACAAGGACGCCTTTAACAAAGTAACAACTTGCTAGCTTTCCactttaaaagacaaaataaatgtttttcaattaatcATTTGCTTTGGTAATCAAACCAAACGAAAGCACACTGCCCCCTTTATGCACTGTAATGGGAGGAAGAGCACGAATATTGAAAAAACATAACGCAGACGTATAAGGGGGATAGAAGGTGGGTGCTGTTTTAAAGGGGTGGCGAATAAGCAATCCCTTGCCTGAGCTAGCTTGATTTAAGGCAAAGCTTGAAAAATCACTACTACAGTCTATATGTGGACAGAAAAATAATGTGCTAACAGCTGAGAGGCTACATGAAGACAGTTGGTGCATTGTAACTGTCAACACTGGCAtcagaggagggggagggaggtggAGTAGCTTGAACAGCTTCAGTGTTTGGACTAGGATTGCTGGTTGAATTAACATCacatttgggggggggggtcagaaAGCCTTCAACCACGTTTTATAAATGAACAATAATATGCAAGCAAATTCCTATTGGTGGAAAACGAGTGAAAATAGGAATAGAAACTGGGAAAATGGCTTAAAATGTCAGGATGAATCCGTGGGTATTGGTGCTATAGGCTAAAAATGAGACCTGTAACAGGTGGTAAGTGTTCTTGATGAGGTCAGAAAGCCCTTGCTGTAGTTTAGCAGACACCAGCCTCTCCAAGCCATGTTGTTAAGGGGTCAGTTCACAAAGACCACGAGACAATATCTAGCCGTGGAGATGATGTGGGATTTATATTTTGAGATCTCTGCTCCTAACCTATTACAATAGAGGTGAACTGAATGTCATTGGTGGTGctcaaattatttaaaatatttgagaAATTAAAGAGCAATGTctctttgcagaaaaaaaaaaaaaatgtgcctACTACTTGGATAATCCAATGTGGCAAGTTCTCACTATTGTTTTTACAATCGACATATAGTTACTGATGAAAATTGTCATAAATTATCCAGAGCAACAGAGACATTTATTCTGGATAGCGCACtgctgttatgttttttttaaatgtacttttacaATGATTTGAGCACCATGGACAACATAGAGTGGCAGTAGAAGTGTCAGACCCATGGCACATACAAACCCAAACTATCCACGAGGCTAAATACTTTGACGTTAAATGGTAAATGTTTAttgatttgggtgaactgaccctttacaTTAAGGAAACCAGGCTGGGCCTCAAGGCACCGGTTCCCATTACAAGTCCCACTtgtgaaagtgaaaaaaaggaaGGGAGATGTCTTGCATGTTACAGACTGCTGTTGCAGAAACGCACTGCCCCTGGATAGTTAAGATTAAACAGATCAGATATGGACCGGCTTGTGTTCTGTTGCAAAAAGAATGAGCACGCCAACACCCCCTGATTGGCCGATGACTGACAGGAAGTGGAGGTAGGTAAAGCAGAGCAGGAAATGAGCTGACTGGCTGTCCATGTGACCTCAGACAGGTTAGAAGCTTAACCTCGGGTGTTACCGGGATTTAATTGGACTTGGATGTAGACAGTGGGTCGCTAGCTGGATTAAGAAAGATGCAGGGGAATACAGTACTGCATCTCCCCCTCCTTACGTTCTGTGTTACACCAGAGAGCTTAAACCCCAGACATTCCATGTTTTCACTCACTCTAGTGCCATTAGTATTTCTAAATCTGGTCTCTATTATATTTTCTGCAGCTGCGTCTCCTCCCTGGCCTGCCAACTGACTTAACAGTAGGAGGAGAATGGAGTTGGGTAGGGGCGAGAAACCGCAGGGTGACCGTACAGAAACGGCCGTACACggagggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165913 lncRNA downstream 35581 11846053 ~ 11847383 (-) True G123341
TU165909 lncRNA downstream 35581 11847073 ~ 11847383 (-) False G123341
TU165914 lncRNA downstream 36065 11845664 ~ 11846899 (-) False G123341
TU165908 lncRNA downstream 37043 11845610 ~ 11845921 (-) False G123341
TU165906 lncRNA downstream 37492 11843411 ~ 11845472 (-) False G123340
TU165936 lncRNA upstream 54753 11953923 ~ 11956600 (-) True G123356
TU165952 lncRNA upstream 105705 12004875 ~ 12006402 (-) True G123369
TU166041 lncRNA upstream 333539 12232709 ~ 12233693 (-) False LOC120570668
TU166094 lncRNA upstream 719866 12619036 ~ 12619284 (-) True G123480
TU166131 lncRNA upstream 987299 12886469 ~ 12888677 (-) True LOC120569379
XM_039818836.1 mRNA downstream 29725 11847489 ~ 11853239 (-) True chpfa
XM_039817662.1 mRNA downstream 295891 11581030 ~ 11587073 (-) True LOC120569666
XM_039819012.1 mRNA downstream 415025 11280610 ~ 11467939 (-) True thsd7ba
XM_039819127.1 mRNA downstream 606258 11270196 ~ 11276706 (-) True LOC120570648
XM_039819128.1 mRNA downstream 614112 11262358 ~ 11268852 (-) True LOC120570649
XM_039818574.1 mRNA upstream 28831 11928001 ~ 11931566 (-) True LOC120570301
XM_039817933.1 mRNA upstream 115603 12014773 ~ 12023501 (-) False LOC120569817
XM_039817932.1 mRNA upstream 115603 12014773 ~ 12019154 (-) True LOC120569817
XM_039817931.1 mRNA upstream 147336 12046506 ~ 12050719 (-) True LOC120569816
XM_039819132.1 mRNA upstream 185853 12085023 ~ 12087014 (-) True kctd4
TU165255 other downstream 2882841 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 3079874 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 4565371 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 4703806 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 4738756 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 720183 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 2885391 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 2885391 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 3085315 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 3518030 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile