RNA id: TU166094


Basic Information

Item Value
RNA id TU166094
length 249
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G123480
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12619036 ~ 12619284 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGAAGGTTTATGACCATCAGCCACATGACCAGATGTCCCTCCTTGAAGCCATGGATGCTGGATGCAGGGATATCACAGTTCATGATTGCCAAGGGTGGATCCGACATGCCAAGCGGTTTTATCCCAGGTGCATCGCCTTGGATGATATcagatgtgatgttgatgaaaacatGTGGCCTAACCCTGAAGATCGCAGGGATTAGATACAGTAattttgtgcttttttgttcccccttttttatctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166041 lncRNA downstream 385343 12232709 ~ 12233693 (-) False LOC120570668
TU165952 lncRNA downstream 612634 12004875 ~ 12006402 (-) True G123369
TU165936 lncRNA downstream 662436 11953923 ~ 11956600 (-) True G123356
TU165926 lncRNA downstream 719866 11877339 ~ 11899170 (-) False G123348
TU166131 lncRNA upstream 267185 12886469 ~ 12888677 (-) True LOC120569379
XR_005640874.1 lncRNA upstream 267805 12887089 ~ 12889147 (-) False LOC120569379
TU166132 lncRNA upstream 269545 12888829 ~ 12889112 (-) False LOC120569379
TU166214 lncRNA upstream 397067 13016351 ~ 13016738 (-) True G123580
TU166257 lncRNA upstream 676764 13296048 ~ 13297924 (-) True G123620
XM_039817396.1 mRNA downstream 142256 12265973 ~ 12476780 (-) True epha6
XM_039817397.1 mRNA downstream 142257 12265973 ~ 12476779 (-) False epha6
XM_039818755.1 mRNA downstream 353606 12261742 ~ 12265430 (-) False LOC120570415
XM_039818753.1 mRNA downstream 353606 12261742 ~ 12265430 (-) True LOC120570415
XM_039818757.1 mRNA downstream 353607 12261742 ~ 12265429 (-) False LOC120570415
XM_039817405.1 mRNA upstream 90001 12709285 ~ 12816585 (-) False epha3
XM_039817400.1 mRNA upstream 90001 12709285 ~ 12816585 (-) False epha3
XM_039817399.1 mRNA upstream 90001 12709285 ~ 12816585 (-) False epha3
XM_039817404.1 mRNA upstream 90001 12709285 ~ 12816585 (-) False epha3
XM_039817403.1 mRNA upstream 90001 12709285 ~ 12816585 (-) True epha3
TU165255 other downstream 3618913 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 3815946 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 5301443 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 5439878 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 5474828 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 69 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 2165277 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 2165277 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 2365201 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 2797916 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile