RNA id: TU166131


Basic Information

Item Value
RNA id TU166131
length 2058
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120569379
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12886469 ~ 12889147 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGAATCTACATAGGGATTTATGAGCTATGGAAAACATGTAATAATGTATGCATATGGTAAACACGCAGTACTAACTTTTTCAGCATGATACTGGTTATTTGTGTTCATTTTGCAGTTGTTCATATTTCATCTTAGAAGTCAGACAATTATGTGAGTAATGCTTTCTCATAGAGCCACTATCCAAACCAAAGAACCACTACAGAGGACCAATTTACATAAGCACACATTTGCATATATACATGAATGTAAACaaccatatacagtacatgttggACTTCCTCACAAGCATCCACGTTTCCATGTGACAACGCACCAAAGCAGGAAGAAATCTTACATCAGATCCAGCCGAAGGCCTCAAACTCATTCTCAGTGAAACTCCTGTGCTCCATTGAAGAGGCAGAGCTGTCAGAGTGGGTGGCATAACCAAGCTGACAgcctgctgtgggctgctgcTCTTTATTCGCCAGACAGAGATCAGCAATTTTCAATTTCCTCCTTGCCGCACGCTTAAGCCCACACACTACCGAGACACTCTTCAACAACAAAGGCCAACTTCTTTGACTGAGAAAGATGACTAACAATTGGACCGAGTGGTGGATTATCCAATCGGAACTGCTGTTGCTGGTGGGTGGTCTGTCTCTTTTCATACTCCTCTTTCCTTGGCTCTAAGTTTTGACCAATCCCCTGCCAGATGGGGTCACTAAAGTCTCACCACCAGCACCCCTATTGGTCGGGGTTGTTCACTGGGTAGTGGTGCTGAGAGGAGAACAATGAATGACATCAATAACACGACTTGCCAGGcctatgctgtgtgtACGGTGTATGCTGGCTGCCTCTGTCTCCCTTCTCTGTGCGCCAGTTCTCCGCCTGAAAGGAATCTCAGGCTTTCAAGGCTCTTTTTGTGAAGCGCTCATCAAAGCCTCCGCAAACACTATACTGCTGTTTTTGAAGTCAATATCCCACTCTTACTTTGGATGAGATATACTGGTCATAGTTCTGTGGCTCTCTCTCGTCATTATTTAAATTATATGTATGTGCTCCAATGCAAATGAGCCTTTGTTTTCCTGAAGAAGGTAACCAATTTATTTAAATTGACCATTATGATTAATTTCCATAACtggcattctctctctctctttgctctctctttccccccctTTCTTTGAGATCTTTGTGTTTCCTTTGTACTGTACTGAAACCTTCAGGAATAAAGGGGAAACCAGTTTGACCTTCATGGAAACCCTTGAAGGATGGACTAAACATTTATGAGATGTCTGTGAGGAGGTTCCCGCATCTTATTATTTACCATGAGAAACTTCAAACAAACATATAtaaaagcatatttaaaaagtaaagaaaaattcTGAAGAAAAGAAATTCGATATAGCTGTTGACTGCTTTGAAGGATTAAATTGTGGGACATTTAGGATAAATTATTCCTTGACATGGCAATATATGTTTATaatttgttttctgaaaattgcACCCCATTATAATGATATAATCTAAAGAATGCTCCACCGTGTTATTATGATCCATGCCCACTCCCAGACCTTGctgcctctcctcctctctggaTCATAATCCCAGCGTTCCTCTACAGCAGAAGGATCGTCAATATGGCTGAGTATTTCCTCTCTTGCTGAGCTCACTGATGATTTGGCCAGACAGCCAGTGGAAAATTGGAAAGTAAAATTTTTGGggcagtaaaaagaaaaaaacaggcagGACAACAGGGAACGATGAAATAGCTTATCCCCACGAACACAAAGGCAGTAAGAGGACACTTCCCCTCCTGTTGAAATGCTGAAGACTGCTTTGTCATTCCCCTAATTGGATGTGATTACATTATAACTGGGAGGGAATGATCCCAGTCACTCGCAGGGGTAAATCTGGGTGCTTGTTCTATCACAAATTACCTCTTATTGAATTAATTTTCTTTGAATAAAAGTTGGCAGAGACACAAAGTCTCATACAGCACTACTTTGGACACAACTGTGACAATGGGTGGGATAATTTGCTCCTCCAAAATAAAAGAACACAACAAAATCTGATC

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166094 lncRNA downstream 267185 12619036 ~ 12619284 (-) True G123480
TU166041 lncRNA downstream 652776 12232709 ~ 12233693 (-) False LOC120570668
TU165952 lncRNA downstream 880067 12004875 ~ 12006402 (-) True G123369
TU165936 lncRNA downstream 929869 11953923 ~ 11956600 (-) True G123356
TU165925 lncRNA downstream 987299 11882964 ~ 11899170 (-) False G123348
TU166132 lncRNA upstream 152 12888829 ~ 12889112 (-) False LOC120569379
TU166214 lncRNA upstream 127674 13016351 ~ 13016738 (-) True G123580
TU166257 lncRNA upstream 407371 13296048 ~ 13297924 (-) True G123620
TU166266 lncRNA upstream 435543 13324220 ~ 13324438 (-) True G123629
TU166269 lncRNA upstream 459141 13347818 ~ 13348186 (-) True G123632
XM_039817405.1 mRNA downstream 69884 12709285 ~ 12816585 (-) False epha3
XM_039817400.1 mRNA downstream 69884 12709285 ~ 12816585 (-) False epha3
XM_039817399.1 mRNA downstream 69884 12709285 ~ 12816585 (-) False epha3
XM_039817404.1 mRNA downstream 69884 12709285 ~ 12816585 (-) False epha3
XM_039817403.1 mRNA downstream 69884 12709285 ~ 12816585 (-) True epha3
XM_039817041.1 mRNA upstream 45131 12933808 ~ 12936107 (-) True c12h3orf38
XM_039818289.1 mRNA upstream 61091 12949768 ~ 12960648 (-) True LOC120570062
XM_039817073.1 mRNA upstream 74050 12962727 ~ 12993294 (-) False htr1fa
XM_039817070.1 mRNA upstream 74050 12962727 ~ 12993294 (-) False htr1fa
XM_039817072.1 mRNA upstream 74050 12962727 ~ 12992288 (-) False htr1fa
TU166096 other downstream 266654 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 3886346 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 4083379 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 5568876 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 5707311 7179077 ~ 7179158 (-) True trnas-aga_9
TU166598 other upstream 1895884 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 1895884 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 2095808 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 2528523 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 3210601 16099278 ~ 16101593 (-) True G124303

Expression Profile