RNA id: XM_039818292.1


Basic Information

Item Value
RNA id XM_039818292.1
length 5381
RNA type mRNA
GC content 0.50
exon number 39
gene id cps1
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 13635554 ~ 13696334 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCAATTTTTCAAGCTCTCAGTTGAACTGTGTGTAATGACACGAGGAGCAGCAGCCCAAAACTCATCCATTCCACTGTCTTCTAAAAGAACATTTACACGCAAGACGCAATTGTGCAATTTGCAGGACATTGTAAATATTGAATCTATTTTTTCATATCGGGAAACTTTTCATGCACGTCTGTGCTACTTTACTAAAAGAGTAATTTAGGCTAATATGACAAAAATCCTGCTAGCTCACAGCGTTGTTAAATCTCTGAGACAAGGATGTGTGGTTGGCAGAAGAGTAGAAAACACGTCGGCATGGCTGAGATTTCAAACTACAAAACTGTTTAGTTTGAAGGCCCAGACGGCCCACCTGGTCTTGGAGGATGGTACCAGAATGAAAGGATTTTCCTTTGGGCATGATGCCTCTGTAGCCGGAGAACTCGTCTTCAATACTGGCCTGGTGGGGTATCCTGAGGCCCTGACTGATCCCAGCTACAGAGGTCAGATCCTTACCCTGACCTACCCTATTGTGGGAAACTACGGGGTACCCAACAGCCAGGAGCTGGACGAGCTGGGCCTTAGAAAACATTTGGAGTCAGAGCGTATCCAGGTATCTGGTCTTCTTGTTCAAGACTACAGTCACGAGTACAGCCACTGGAACTCTGTCAAGTCTTTGGGGCAATGGCTACAAGAAGAGAAGGTTCCTGCATTGTTTGGAATAGACACCAGAATGCTGACCAAGATCATCAGAgacaagGGCACAGCTTTGGGGAAGATTGAATTTGATGGGCAGCCTGTTGAGATATCTGACCCTAACCAGAGAAACTTGGTAGCAGAGGTCTCAACCAAGGAAACCAAAGTTTTTGGAAAAGGAAACCCAATAAAAGTAGTGGCTGTTGATTGTGGTATTAAACATAACATCATTCGCCTGCTGGTTAAGGTGAGAAAGAATATAAGAGggattgaaaaaaacatttTGGCTGGTGTTGACCCACCTGAAGGACATCAGAGGACCCCGCTGAACCATCTGCAGTTTGCCTACCGGGCAAACAGGTCAGTGGATAATGCAGTCAACATGGGACTGCACTACATCCTGCAACACCTTGACTCCCCAGGGACATATGCAAGGATCCAATTTGTGGATTTCAGATCAGTGTTCAACACCGTCATCCCAGAAATCCTCCGCTCCAAACTCCCCCAGCTCACTGTCCCACCTCAAACCTGTAAGTGGATCACAAActttctgacagacaggagAAAGCAGTTGAGGCTGGAGAAAATCTCTTCCAGCTTCTGGACCATTGGTACTGGCGCCCACCAGGGATGTGTGCTCTCTCCACTGATCTTCTTCCTCTATACCAACGACTGCTCCTCAGGAGACCCGCCTGTTAGACTGCCCACTGTGgcttcctcctcctttcctgtCTGCTTCagAGGCCAGAACCAGCCGGTGCTGAATGTGATGACGGGCCAGGCCTTCATTACGGCGCAGAACCACGGCTACGGCATAGACAGCCAGTCCTTGCCCCCAGGGTGGAGCCCACTTTTCATCAACGCCAATGATGGCACAAATGAGGGCATCATGCACAACACGAAGCCTGTATTTACGGCCCAGTTTCACCCGGAGGCTAAAGGCGGTCCCACCGACACAGAGTTTCTCTTTGATGCCTTTATGTCCCTGATCAAGAAAGGAAAAGATGCCAATATAGTTTCAGTGATGCCTAAGAAACCACAGATTCCTCCCAGAGCCCAGGTGTCGAAGGTGCTCATACTGGGTTCTGGTGGTCTGTCTATCGGTCAGGCTGGAGAGTTTGACTACTCTGGATCACAGGCCATCAAGGCCATGAAGGAGGAAAACCTGAAGACGGTGCTCATGAACCCAAATATAGCCTCTGTTCAGACCAATGAAGTGGGAACCAAACAGGCCGATTCGGTCTACTTCCTGCCTGTCACGCCACAATTTGTAACTGAAGTCATCAAGACCGAGCGTCCAGATGGCATCCTGCTCTCCATGGGCGGACAGACTGCACTCAACTGCGGAGTTGAATTATTCCAGAGTGGTGTCCTGGAGCAGTACGGGGTGAAGGTCCTGGGAACCCCAGTTGAATCCATCATGGccacagaggacagacagcttTTTGCTGACAAACTGAATGAGATTAATGAGAAAATTGCACCCAGTTTTGCTGTGAAGTTGGTATCTGATGCCTTGAAAGCAGCGGAGCAGATTGGCTACCCTGTGATGTTGCGATCTGCCTATGCCCTTGGAGGACTGGGGTCTGGTCTGTGTGCCAACAAAGAAAAGCTGGAGGAAACTGCACACAAGGCTCTGGCTATGAGCAGTCAGATTCTGGTGGAAAAGTCTTTGATGGGCTGGAAGGAGGTGGAATATGAGGTGGTGAGAGACGTGGCTGACAACTGCGTCACTGTCTGCAACATGGAGAACTTCGACCCACTTGGCATTCACACAGGTGACTCCATAGTGGTGGCACCAAGCCAGACATTGTCCAACGAGGAGTACCACATGCTCCGTGAGACGGCCATCAAAGTGGTTCGTCACCTTGGCATTATAGGCGAATGCAACATCCAGTATGCCCTACACCCGTCGTTGGAGTACTGCATCATTGAGGTTAACGCCCGGCTCTCCAGAAGCTCCGCTCTGGCATCCAAAGCCACTGGGTATCCATTGGCTTTTGTTGCTGCTAAGCTGGCTTTGGGTATCCCACTACCAGAGATCAAGAACGCTGTATCGGAGAAGACCACAGCCTGCTTTGAACCCAGTCTAGACTACATAGTCACTAAGATCCCCCGCTGGGACCTGGACCGCTTTCAGGGCATGTCCCATGAAATAGGCAGTGCCATGAAGAGTGTCGGAGAGGTGATGGCAGTTGGCCGGACCTTTGAAGAGAGTGTTCAGAAGGCCCTGAGGATGTGTCATCCATCAGTAGATGGCTTCGTGCCCCGGCTACCACTCAAGAAAGCCTGGGCCGACACACAGGACCTGGAGCAGGAGCTGGCTGTGCCCTCCATTACCCGCATATTCTCCCTAGCCAAGGCCCTCCACAGTGGTATGAGTGTTGATCAGATCCACCAGCTCACGTTCATAGACAAGTGGTTCCTCCACAAACTCAACAGGATAACACAGCTGGAGCAGCACCTGGCAAACTACAACAGTGGCACAGTACCTAAGGGGCTGCTGCTGAAGGCCAAGCAGGACGGCTTCTCAGACCGGCAGGTTGGTCAGATACTGGGCTCCAGTGAGCAAGCAGCCAGAGAGCTGAGGCTCACTCACGGCATCAAACCCTGGGTCAAACAGATTGACACCTTGGCAGCAGAGTATCCAGCCATGACCAACTACCTGTATTGTACCTATCATGGCCAGGAGAATGATCTGGACTTTAAAGACCAGGGAATTATGGTTCTTGGTTGTGGGCCCTACCACATTGGGAGCAGTGTTGAGTTTGACTGGTGTGCGGTGTCCAGCATCAGAGCTTTGAGACAGATGGGCAAGAAGACCGTGGTGGTCAACCACAACCCTGAGACGGTCAGCACTGACTTTGACGAGTGTGACCGCCTTTACTTTGAGGAGTTGACCCTGGAGCGCATCTTGGACATCACCCAACAGGAGGGTTGCTCTGGCAGCATTGTGTCAGTTGGAGGCCAGATCCCCAACAACCTGGCTGTCCCGTTGCACCTCAGTGGGGTGAAGATTCTGGGGACGAGCCCCCTGCAGATCGACCGTGCTGAGGAACGCTCCGTCTTCTCCAGTATACTAGATGACCTCAAGGTGGCTCAAGCCCCATGGAGGGCCCTCAGCTCCCTGGAAGACGCCTTTGCCTTCGCCAACCAAGTGGGCTATCCCTGTCTGCTGCGCCCCTCCTATGTTCTCAGCGGCTCTGCGATGAACGTTGTGTACGGAGAAGAGGAGATGAAACGCTTCTTGGGGGAGGCAACTCAGGTGTCCCAGGAGCATCCAGTGGTCATCACCAAGTTCATTAGCGGTGCCAGGGAGGTAGAGGTGGATGCTGTGGCAAAAGGTGGCAAGGTGCTGGTCCATGCCATAACTGAGCATGTGGAAGATGCGGGGGTACACTCAGGAGATGCCACTCTAATGCTACCAACCCAGACTATTAGCCAGGGGGCACTAGAAAAGGTTAAGATTTCCACCCGGAAAATTGCGCAAGCATTTGAAATTTCGGGGCCCTTTAACACTCAATTTCTGGTTAAAGGCAATGATGTTATGGTGATCGAGTGTAATCTGCGGGCATCACGCTCATTCCCTTTTGTATCAAAAACAATCGGTGTGGACTTTATCAATGTGGCAACTAAAGTAATGGTGGGAGAGCCTTTGGATGAGGCCAGCCTGCCCTCGCTGGAGAGCCCCATCATCCCTGTAGACTACGTAGGCATCAAGGCACCCATGTTCTCCTGGCCACGGCTAAGGGATGCAGACCCTGTGCTTCGCTGTGAGATGGCCTCCACTGGAGAAGTAGCTTGTTTTGGACCAAACATTTATTCAGCATTCCTGAAGGCTATGCTCTCCACAGGCTTTAAGCTACCACAGAAGGGCATCCTGATTGGGATTCAGCATTCGTTCCGACCCAATTTCCTGGCTACAGCCCATCAGCTGAAAGAGGAAGGATTCAAGCTCTATGCTACTGAAGCCACTTCTGCTTGGCTGTGGGCCAATGATGTGCCTGCCACTCCAGTTGCCTGGCCCTCTGATAAGGGAGGAGACACCAGTTTGCCTAGTATTAAGAGACTCATCAGCGAGGGTCTTATTGACCTGGTGGTCAACCTGCCCAATAACAACACTCGCCACCTGAAGGATAACTTCCTCATCCGTAGAATGGCTGTCGACCACGGTGTTCCCCTCATCACTAATCATCAGGTGGTGAAGCTGTTTGCAGAGGCTATTCACCATGCAGGTGACCTTGACACTACCAGCCTCTTCCACTACCGGCAGAAAGAAAAGCAACGAGTGGCTGACCAGCAGGGCTAATGGAAGCTTCCTTCCATTCCCTTTGGTTCCCTTTGTAAAACAGCAGCATTAATTGTGAGGAAATGTTCATAATACGGTTTTCAAAAATTCCTTCTGTTTTACCATCCCATGTTGTCAAGATGTAGAGTTATTTTAGTGCTATGAATTTCAATCTGTCAGGAGTTTTCTAGcaaaacacaataataaaacaatgttgATGCATCATAACAATTTGGTACCACTGTTTAATAAGGGGTTTGTAAGTTGTAACTAATGGTTCTCTAGTTAAATCTGTGGTTGGTGTTTATCCTCCAGCATGCTTGTAAATGTTAATAAGAATGGGTTCTTATAGTAATTCAAGTCTGGCATTGTAAATATTAGTAAGCTGTGAATAAAATGGATCGTGGACCAGA

Function

GO:

id name namespace
GO:0070409 carbamoyl phosphate biosynthetic process biological_process
GO:0006543 glutamine catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166271 lncRNA upstream 258414 13372348 ~ 13377140 (+) True G123634
TU166126 lncRNA upstream 773731 12861554 ~ 12861823 (+) True G123505
TU166112 lncRNA upstream 958142 12677109 ~ 12677412 (+) True G123494
TU166111 lncRNA upstream 959428 12675926 ~ 12676126 (+) True G123493
TU166109 lncRNA upstream 971083 12664001 ~ 12664471 (+) True G123491
TU166366 lncRNA downstream 17876 13714210 ~ 13715962 (+) True G123714
TU166373 lncRNA downstream 73345 13769679 ~ 13769942 (+) True G123721
TU166380 lncRNA downstream 197946 13894280 ~ 13896128 (+) True G123725
TU166386 lncRNA downstream 465348 14161682 ~ 14162642 (+) True G123731
TU166417 lncRNA downstream 687785 14384119 ~ 14384351 (+) True G123759
XM_039819145.1 mRNA upstream 15055 13513114 ~ 13620499 (+) False map2
XM_039819147.1 mRNA upstream 15055 13513114 ~ 13620499 (+) False map2
XM_039819148.1 mRNA upstream 15055 13513114 ~ 13620499 (+) False map2
XM_039819151.1 mRNA upstream 15055 13513115 ~ 13620499 (+) False map2
XM_039819150.1 mRNA upstream 15055 13513116 ~ 13620499 (+) False map2
XM_039817647.1 mRNA downstream 764556 14460890 ~ 14488147 (+) True vwc2l
XM_039817646.1 mRNA downstream 764556 14460890 ~ 14488147 (+) False vwc2l
XM_039817648.1 mRNA downstream 764562 14460896 ~ 14488147 (+) False vwc2l
XM_039818900.1 mRNA downstream 918023 14614357 ~ 14616247 (+) True LOC120570509
XM_039817683.1 mRNA downstream 921374 14617708 ~ 14621463 (+) True LOC120569679
TU166270 other upstream 281469 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 355688 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 3016858 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 3706663 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 3710714 9920711 ~ 9924840 (+) False umps
TU166397 other downstream 536998 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 1442143 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 2402937 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 3301447 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 3431547 17127881 ~ 17177640 (+) False myo3b

Expression Profile