RNA id: TU166366


Basic Information

Item Value
RNA id TU166366
length 1753
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G123714
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 13714210 ~ 13715962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgaatcctcgcttagcttctcagcaggaacagaaactgttcatcccgacggaaattttagaacaacaattatgtgcattcaaactaccacacacgcgtaccaccgggatacattggaacacatcggagaatatgcaggacactttattacagacgcaatactccacacactacgcaagctttgcctgcacggagaccagcggtagtgctcgattcctgtggcctttaaagtgacctcatcagcggggagcgttgaacgagtgtgccggtggaaagctaacgctagccagccatctCATttaccaatcctgcttgcaagtgtccgctcattaaacaaactggactacatccaactttaacgaaactcccaacgtgagttcagagactgctgtgctgtgtttttgttgttgtggaaatattgctgtggacaatccagcctgctgctcggtcaccgggtaagactactagtggaggtgggctgtgttaccccggactgcctgttgcagaaatggggtgatttgtatccaactaactgctaactgctggtggagtttgtgactgtaaaatgccgacaattctagctacatcccacgcaaatatacggctgtgtttatactcgatgtttataccacagcccaccaagagctaatactagtagctatgtgttagccttcttttattacatggcttgcttgaattctaatgtagaatgcggtctgttatttcttgataacagaccgctgctaaggataacacaccgttgccatgcaaaagcagagctatcaatcaatccgctgaaagaagtccggataatttagcctatcagctgtggcaaaaagtggggaaacgTGGAGCAACTTCTGTCCTCCAAGCAATGACAGCAGATCTGATGAGTGTCTATCGCTAGTATCTTTCTATACCGTCTATGATCGCTAGCTATGCAGTAACAGCCGTAGGGACAACAACgctaattcaatcaggagagacttccttgcaattatgaacatatttattgtacatacaacatgtaaatgtacgagtctctggagattggactccatcgaatccaaatatcctaaagggtttaaggaacccaaacaaatcccctgatggagtccagacactggtggtggagaATAAATAGAGGGACCATCAACAGCCAAGCCGAGATGCAACCCAGGTCCGAGGGCGTGACCACCGgtggcagaaggggaggaggcgggacgcactctatttcctgaaacgacaactgccaaccgtggaagagagagcagatttaaagcagggtatcaagctgtgataggctcgtcGACAAATGGTcgaccctgattggtttaactaacaacaacaacacagctgttctgattactactgacaagtgacgtACCGTAAAACAGCTtatcattatgagtgatggaaaagtgaatgaagtcttcctttaagaatttacgctgagcttcatttagTTAGCTTACATTGCAACTTGTTTAACGATAACTTACAGGTGTGTCAACATGCAGCGGCTCTGCAAAAAGGAAACgagatgaatgaggacataaacgtccacataaatattcccaaagaagccattcaccgtgtctcacttcaccgtcaacagaaatgttcagtttactgtaaattagagcagccgatagcccgctagctcactacaacgcttcagctaatgttgtgtcaattcctgcagtgattaaaacagcagctgggtCATTTGTCCACCACGGCAGCACCCCat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166271 lncRNA upstream 337070 13372348 ~ 13377140 (+) True G123634
TU166126 lncRNA upstream 852387 12861554 ~ 12861823 (+) True G123505
TU166112 lncRNA upstream 1036798 12677109 ~ 12677412 (+) True G123494
TU166111 lncRNA upstream 1038084 12675926 ~ 12676126 (+) True G123493
TU166109 lncRNA upstream 1049739 12664001 ~ 12664471 (+) True G123491
TU166373 lncRNA downstream 53717 13769679 ~ 13769942 (+) True G123721
TU166380 lncRNA downstream 178318 13894280 ~ 13896128 (+) True G123725
TU166386 lncRNA downstream 445720 14161682 ~ 14162642 (+) True G123731
TU166417 lncRNA downstream 668157 14384119 ~ 14384351 (+) True G123759
TU166423 lncRNA downstream 697426 14413388 ~ 14413623 (+) True G123765
XM_039818292.1 mRNA upstream 17876 13635554 ~ 13696334 (+) True cps1
XM_039819145.1 mRNA upstream 93711 13513114 ~ 13620499 (+) False map2
XM_039819147.1 mRNA upstream 93711 13513114 ~ 13620499 (+) False map2
XM_039819148.1 mRNA upstream 93711 13513114 ~ 13620499 (+) False map2
XM_039819151.1 mRNA upstream 93711 13513115 ~ 13620499 (+) False map2
XM_039817647.1 mRNA downstream 744928 14460890 ~ 14488147 (+) True vwc2l
XM_039817646.1 mRNA downstream 744928 14460890 ~ 14488147 (+) False vwc2l
XM_039817648.1 mRNA downstream 744934 14460896 ~ 14488147 (+) False vwc2l
XM_039818900.1 mRNA downstream 898395 14614357 ~ 14616247 (+) True LOC120570509
XM_039817683.1 mRNA downstream 901746 14617708 ~ 14621463 (+) True LOC120569679
TU166312 other upstream 36864 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 360125 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 434344 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 3095514 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 3785319 9926817 ~ 9928891 (+) False umps
TU166397 other downstream 517370 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 1422515 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 2383309 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 3281819 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 3411919 17127881 ~ 17177640 (+) False myo3b

Expression Profile