RNA id: TU166540


Basic Information

Item Value
RNA id TU166540
length 204
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G123848
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14673136 ~ 14673339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGATTCCctcagatttatttttaaaaaattgtgACCAACATACATACTGAGCGAGacattttacaataataaaCTTGTCAGTGGTCTCTGACAAACTGTGGCTTTAGTATCACTGGCCAAACACACCATATTTTGTTCTCTGAACTGTATTAGTGTGTGCGCAAGCGTGCCTTGGTATTTGGTATTAGTACTCATGAATGCac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641043.1 lncRNA upstream 257999 14414287 ~ 14415137 (+) True LOC120570330
TU166423 lncRNA upstream 259513 14413388 ~ 14413623 (+) True G123765
TU166417 lncRNA upstream 288785 14384119 ~ 14384351 (+) True G123759
TU166386 lncRNA upstream 510494 14161682 ~ 14162642 (+) True G123731
TU166380 lncRNA upstream 777008 13894280 ~ 13896128 (+) True G123725
TU166547 lncRNA downstream 46789 14720128 ~ 14720815 (+) True G123855
TU166551 lncRNA downstream 81189 14754528 ~ 14754749 (+) True G123859
TU166629 lncRNA downstream 261857 14935196 ~ 14935409 (+) True G123907
TU166637 lncRNA downstream 277745 14951084 ~ 14955541 (+) True G123911
TU166647 lncRNA downstream 310675 14984014 ~ 14984415 (+) False si:dkeyp-118h9.7
XM_039818877.1 mRNA upstream 989 14663789 ~ 14672147 (+) True desma
XM_039818878.1 mRNA upstream 989 14663789 ~ 14672147 (+) False desma
XM_039817690.1 mRNA upstream 38553 14622915 ~ 14634583 (+) False dnajb2
XM_039817689.1 mRNA upstream 39941 14622026 ~ 14633195 (+) False dnajb2
XM_039817687.1 mRNA upstream 39941 14622067 ~ 14633195 (+) False dnajb2
XM_039818856.1 mRNA downstream 39246 14712585 ~ 14727378 (+) True LOC120570476
XM_039818859.1 mRNA downstream 39247 14712586 ~ 14727378 (+) False LOC120570476
XM_039818857.1 mRNA downstream 39247 14712586 ~ 14727378 (+) False LOC120570476
XM_039818469.1 mRNA downstream 90768 14764107 ~ 14776404 (+) True LOC120570233
XM_039818470.1 mRNA downstream 90768 14764107 ~ 14776404 (+) False LOC120570233
TU166397 other upstream 439066 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 995790 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 1319051 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 1393270 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 4054440 10607484 ~ 10618696 (+) False lrp1bb
XR_005640926.1 other downstream 465138 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 1425932 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 2324442 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 2454542 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 3186821 17860160 ~ 17880726 (+) False hoxd10a

Expression Profile