RNA id: TU166598


Basic Information

Item Value
RNA id TU166598
length 1057
RNA type TUCP
GC content 0.53
exon number 10
gene id G123886
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14784561 ~ 14794497 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacacacacacacacacacacaagaatgaactcacatttgcacaaacacacatacagacacgcacatgcacacacagcccTACTCTGGGGCCTCACAGTAATTTAGCTCTGCAAAAGATAGAGCCTAACAGTGAGATTGCCACTTTGCTTGCCAGTAGTTGGTCTAGGCAGTCATGCGATCATTGctggtctaggaggagttcagcAGGTTGCTTAGGActTGGGGATCTGCCTGAGCCTCGGCTGTATCCACTTTGCGTGCAGCTTCTGGATCTGCTTCCTGTCTATTTTTGAAGCACAGCTTTTTCTGCTGAAAGGTGAAGTATCCAACGATTGCTCCAACTACAGCCACACCAACTGCAACCAGGATGCCTACTATAGGGCTGGAGCGGGCCTCGTTGGGTTTAGGTTTGTCTGCATCTCCTATGGCGCCAGCAGCATGtgCCCCAGAACGGCTCCGTCCTTGGCTGTTCACTGCATTCTCTTCTCCTGCCAGAGCATCTTCCAGGTTAAATCCTACATCTGCATTCACCTTAGCAACAATATCTTCTGTTATTGTAGGGACAGGGACGTCTACTTGTGGTACTACATTTTCATCACCAGCTGGATCAGTAAGTGTTTCCTCATCTGCTACAGTTGGATCTGCTGCTGGTGTGGCTTCAGGTCCActCTCCTCCTGAGCAGGTGTTGCACCAATGCTTGAGGTAGCTTCCTCCTCTCCATTACCTGTTGGTTCATCAGCCTTTGGATCCTTAACCTCTGCATCAGCTGCAGGCTCTTGTGTTGCAGCTGCTTCTGCCTCAGTGTCTGCTGGTTCTGGTTCCTCAGGTGCAGGTGTCGCTGGTTCTGCGTCTTCAACCGCAGGAGTCACTGGTTCATCGGCTCCATCTTCATGGTCAGCAGCGGGCTCGGGCTCAGGCTCAGTCTCAGTCTCGGGCTCAGGCTCAGTCTCAGTCTTGGGCTCAGGTTCGGCCTCAGGCTCGGCCTCAGGCTCAGTCTCAGTCTTGGGCTCAGGTTCGGCCTCAGGCTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166584 lncRNA downstream 54181 14726756 ~ 14730380 (-) True G123878
TU166587 lncRNA downstream 54181 14726756 ~ 14730380 (-) False G123878
TU166578 lncRNA downstream 111180 14673131 ~ 14673381 (-) True G123872
TU166555 lncRNA downstream 120063 14598791 ~ 14664498 (-) True G123861
TU166569 lncRNA downstream 136269 14630605 ~ 14648292 (-) False G123868
TU166611 lncRNA upstream 9017 14803514 ~ 14804332 (-) True G123889
TU166677 lncRNA upstream 144834 14939331 ~ 14939574 (-) True G123948
TU166696 lncRNA upstream 189517 14984014 ~ 14984415 (-) True G123959
TU166768 lncRNA upstream 321233 15115730 ~ 15123454 (-) True G124000
TU166770 lncRNA upstream 321697 15116194 ~ 15123945 (-) True G124001
XM_039818969.1 mRNA downstream 46147 14730941 ~ 14738414 (-) True LOC120570577
XM_039818514.1 mRNA downstream 73799 14673543 ~ 14710762 (-) False tmem198a
XM_039818512.1 mRNA downstream 73799 14673543 ~ 14710762 (-) False tmem198a
XM_039818513.1 mRNA downstream 73799 14673543 ~ 14710762 (-) True tmem198a
XM_039818515.1 mRNA downstream 77619 14673543 ~ 14706942 (-) False tmem198a
XM_039818784.1 mRNA upstream 46802 14841299 ~ 14858737 (-) True LOC120570436
XM_039818785.1 mRNA upstream 46802 14841299 ~ 14854316 (-) False LOC120570436
XM_039818796.1 mRNA upstream 108859 14903356 ~ 14918290 (-) True LOC120570445
XM_039818795.1 mRNA upstream 110607 14905104 ~ 14920649 (-) False LOC120570445
XM_039817871.1 mRNA upstream 148628 14943125 ~ 14956778 (-) False si:dkey-67c22.2
TU166096 other downstream 2164746 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 5784438 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 5981471 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 7466968 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 7605403 7179077 ~ 7179158 (-) True trnas-aga_9
TU166697 other upstream 189988 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 622703 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 1304781 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1584112 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 3318613 18113110 ~ 18115089 (-) True LOC120569287

Expression Profile