RNA id: TU166795


Basic Information

Item Value
RNA id TU166795
length 2447
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G124014
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15178318 ~ 15196218 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGGTACAGTACATCAGCATTTATTCCATGCAGTTGTTTGCTCTGATTTTATTCTCCCAGATACCCATTGCACTGTACACTGGATAATACAGGAAACGGACAGGATTGGTTGATCATAATGCCATTCAACAGGAAAGGGAGTTGGAAATGAGAGTAACAAAGAAACAGATGTTAAATACATGGGACGAGGCAACATGATGTCTACAGTTAAGAGACAATTTCACAGAAATTCAGATGTAAGTAACTGGTATTTTGATTAGAAAACAAGAGAAAGGGATCTCTGCAGAAGAACAGAAATCGGCATCACACATGCCTTCAGGCTTCATGTCTCAGTTACCCTCCTGTGACAGTCCACGGACTGGCTTTTGGTTGTATTAGAATTGATTTCCTGTAGCCTAAAAAGCTTTAGGAATGCCTGAGGTTGCCAATTACTGATGAAAAGTCGGCTAAATCAATACTTAATGATGAATAGTCCCCCACAGGGTCACAAAGACAAAAATGATGCCCATGATATGACAATGCTTTTGTTCTCCCATACAAATACTGTCCTCTGCTGATACCAATTTATTGTGCTTCCTTTAAATAATacttttcaggaaaaaaaaaatcataggtCATAACTTTTCTAAAGCTGCCTGAAATTAAAAAGAACACAAACCTTACCAGTCATtcataataaattaattaaataatcatGTAggccagctacaaaaaaaaggaaaagaaaaaaagaatcaaaattaaattaaaactttACAACAATCATATTTCATGGGATAATATGCCAGAAAGACAATGTTATTAACAGCTTGATCGGATTACCCAGTCATTACAATATACTAGGTTATTTCACACATACATGAACAGAATGAAGAAGGTTGAAGGAGGCTCGAGGAAAGGCAACCGCTGCTTTCAGTACCAGGTGTAAGCCTTTCCAAAGCTTTCAAGCAAAAGGGTAATTGATCCATCAGTACAGTTTTAGATTCACCTTGTGCTACTCGGTTCTCATGACTCACACACTCCTGCGGTGGTCAATACTGATGTCATTCAGATGACAGAACTTCCTGCTCATTTTCAACCGCTGGTCATCAGTGACAGAAGGCTCTGTCAGAGCTGGGCGATACGTTATAGAGAGAGGACAAAaacagattacattacatttacagaTGTTTACATACAGGAGTAACTAACACTGAGATGAGGTTTTTGAAAACCAAGAGCAGCTTTATTGCACTCTGTGGCCTTGTCTCTGGCTTTTATTCCCAACTTAGAATCTCAGCCATCTGCACACACTTGACATCATTATTGTTAAGTTCAACCCTGGCTGGCTATTTTTCAACCGCAGAATCATTAAAATGGATGACAAACACTCTAATAGGGATAAAAAATAAAGCTCTCACAGATGCAGTAACCCTTTTTAAAGACAGCTAGTCAAAAATCGTAATATTGCTGGGATTCAAGGATTTGGATGGTCATGGGAAACAGAAATTATCTTGGGTAGTGGCCGGTTAGCACAGTTGGttgagcaggcgcacatatatagaggtttattcctcaacgcagaaggtccaatggtttcctgcatgtcttccccatctctctcccctttcatatctgagctgtcctatccattaaaggcagaaatgcccaatgTATCTTGGGTAGAAAGTGAGGAAAGGAGCCAGGACATTTACATAACACCAGGTAAAGTAAGTCATTGTAACTGTCACCATCTAGTGGCTGTTGATATATTGCTCCAGCTCTCAATCTGCAACATAAAACCTGAGCATTAAACCCCCAGAAACGAGTTCCTAAAAATGggacaatttaaaaatataacaTCTATAATAAGCTGATTGACACTTGCTGCTCTCCTCTAGCCAGCCACCAGTCACTGTATTGTGTCTAGCCAGCTAGACGCCCCGGATCCTGAGTAAGCAACTTCTTTCTCACCTGAGCGCCAACCTACATTATTGCAGTTTTATTCACTACAGCACAGaaaagaattattatttttggacATTGCGGTTAAGACAGTAGAAAGTACCCTGCTAGAAAACGGTAAATGGGAGACGATGCACCTAGTGATTTTAAGAAATGGGATACTGCACCTGGATTGCAAGTAAAACGCTCTATGTCTCTACATAACATTAATGTCTGTTACATCAATAAAGGTTTGAACATCAAGGCTATGTGTAAGACCTTTTTTAATATTCTTGTATGGTCCATATTATGTATATTATTATGAATATATACAATAATTGGTCCAGTCCAGTTTCTCACAGTCCTCGAACAATCCTGAGATGAGACTtgaaactgtaatgtctaatggaGAGGAAAGGGctttgttctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166770 lncRNA downstream 54373 15116194 ~ 15123945 (-) True G124001
TU166768 lncRNA downstream 54864 15115730 ~ 15123454 (-) True G124000
TU166696 lncRNA downstream 193903 14984014 ~ 14984415 (-) True G123959
TU166677 lncRNA downstream 238744 14939331 ~ 14939574 (-) True G123948
TU166611 lncRNA downstream 373986 14803514 ~ 14804332 (-) True G123889
TU166949 lncRNA upstream 279040 15475258 ~ 15476148 (-) True G124136
TU166959 lncRNA upstream 306530 15502748 ~ 15504712 (-) True G124146
XR_005640868.1 lncRNA upstream 668314 15864532 ~ 15901689 (-) True LOC120569338
XR_005640867.1 lncRNA upstream 668858 15865076 ~ 15901689 (-) False LOC120569338
TU167049 lncRNA upstream 688682 15884900 ~ 15901689 (-) False LOC120569338
XM_039817585.1 mRNA downstream 92889 15080444 ~ 15085429 (-) False LOC120569627
XM_039817584.1 mRNA downstream 92889 15080444 ~ 15085429 (-) True LOC120569627
XM_039818098.1 mRNA downstream 99916 15006261 ~ 15078402 (-) False dip2a
XM_039818095.1 mRNA downstream 137552 14996489 ~ 15040766 (-) False dip2a
XM_039817722.1 mRNA upstream 11268 15207486 ~ 15211365 (-) False LOC120569703
XM_039817721.1 mRNA upstream 11268 15207486 ~ 15211365 (-) True LOC120569703
XM_039817726.1 mRNA upstream 27742 15223960 ~ 15236351 (-) True LOC120569706
XM_039818914.1 mRNA upstream 55412 15251630 ~ 15262614 (-) True marchf4
XM_039818522.1 mRNA upstream 80708 15276926 ~ 15285695 (-) False nme9
TU166697 other downstream 184529 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 383821 14784561 ~ 14794497 (-) True G123886
TU166600 other downstream 388412 14784561 ~ 14789906 (-) False G123886
TU166096 other downstream 2558503 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 6178195 8999462 ~ 9000123 (-) True G122878
unassigned_transcript_607 other upstream 220982 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 903060 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1182391 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 2916892 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 2917292 18113510 ~ 18115089 (-) False LOC120569287

Expression Profile