RNA id: TU167012


Basic Information

Item Value
RNA id TU167012
length 1453
lncRNA type sense_over
GC content 0.35
exon number 1
gene id galnt13
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15618514 ~ 15661014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacagtataaacCGTATTATAATTCCTCAAATTTGGCTATTAGAAAACATATAATTTAGGCATTTACAAGTTTTACTTATCAGTTCTCTCTGATGGACAAACTATGTAATGGATACTCGATTTCTAAAATACCTCAAACGTatctttggcatttctgtaaCAGTTTCTTGTGAATGATCAGCTGGCGTATAGGCAGATAATAATATATCTGTGAGAAGTTGATCTGCCAATTTATTGGTCGGGCTCTAGTTGTTAAGGTGGATTTCTTGAGATGTTTGGAAACAAATATTAACCTGAATACTTCAAAccattatattaaaaaaaatgaatagagTGCAGCTATAACGTCCTCCTGGATTAATCTCACAATGTTCCATATTAGTGAAACAGGAATTACAGTATGGAAGTGTGAGGCAGCTCTTTGGATCTGTACGGAAGTTTATTTATAACAGGCTTTTTGAAGAAGTGAAAGAAGTGTTTGCAGGAAAGGAAGAAGCAAGTAATCGAAACTCTGCCAttgattttaaatgaatgtaggaGTTTTCCCTAAATGATTGACTGTGTTCAGAAATCCTTAACTGCACTGTGTCATCACGGCTATCTGAGAGCGTCACTAATGAAGATTCTGCAAGTTTTCAGATTCCTACTACCAATGTCTTTAAAAAGTAATGATGTCTTGGAGCCGGATAGTTAGGTGTGCCTTTAGAAAGTTGTTTACTGGTTTTTAGaaagttgtttatttggttcATTGGTTTTTAGAATGTTTTTGGTGTTTAAAAAGAagaatgttctttttttctcttctcattttgggtaaaaaacaaactgtgtattaataataaataactgTCATATCTCATGAATATGTCACCATCCTATTAATGCTTGATCAAACTTTTCGTTGAAGTCAACATTCAGTATGTCAACACTCACCAATGCAAATGTGACAggtacttttcattgttgatcAGGCAACAAATGTTATTGTACATAATGCTGTTAACAGGTTTCTATCACCATTGTTGTTGTACATACAGAACCAATTATTTTTCTATGATgctgtgaaacatgaacactgAGAAAAAACATTGAATGGTGAAAAGATCACAAGGTTCAGTATTGTAGTGTTTTATTTGGAATCGTGGTAATAAAAAACAGTGCTTACCTTGGATTTTGAAATTGCGGTGTGTTTTGGAAATCATCCTCGTCCCCACGTAACCAATACTCAGACCACCTTGAGGACCTCAAGCGAGCTCTACATGAGGGAGCAACTACTGCTGAAATACTATCAAAGCTGCTTGAATACTGAATCCTTGCCAAGTGCCTGCTTGGCATTCAGACTAAAATTCAATCACGTCTTTCATAGTACCAATACACATATattgtttttcattattttaaagtGCATGGTGTTAAAATAGGAATGTAATTCTTCAATGTACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166967 lncRNA upstream 85559 15507013 ~ 15573848 (+) True sumo3b
TU166973 lncRNA upstream 91946 15536535 ~ 15567461 (+) True G124150
XR_005640857.1 lncRNA upstream 243203 15415408 ~ 15416204 (+) True LOC120569294
TU166819 lncRNA upstream 409578 15243201 ~ 15249829 (+) False LOC120569306
TU166818 lncRNA upstream 409895 15243201 ~ 15249512 (+) True LOC120569306
XR_005641030.1 lncRNA downstream 54747 15715606 ~ 15739958 (+) True LOC120570206
XR_005640866.1 lncRNA downstream 227278 15888137 ~ 15891006 (+) True LOC120569337
TU167069 lncRNA downstream 251356 15912215 ~ 15912428 (+) True G124229
TU167099 lncRNA downstream 310123 15970982 ~ 15977854 (+) False LOC120570321
TU167186 lncRNA downstream 619740 16280599 ~ 16280878 (+) True G124323
XM_039818325.1 mRNA upstream 1127 15618514 ~ 15658280 (+) False galnt13
XM_039818324.1 mRNA upstream 1134 15618514 ~ 15658273 (+) False galnt13
XM_039818326.1 mRNA upstream 1134 15618514 ~ 15658273 (+) False galnt13
XM_039818328.1 mRNA upstream 1134 15633080 ~ 15658273 (+) False galnt13
XM_039817505.1 mRNA upstream 93565 15515463 ~ 15565842 (+) False fmnl2a
XM_039818964.1 mRNA downstream 7419 15668278 ~ 15696574 (+) True kcnj3a
XM_039818616.1 mRNA downstream 241828 15902687 ~ 15909852 (+) True LOC120570324
XM_039818612.1 mRNA downstream 312402 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA downstream 312402 15973261 ~ 15977874 (+) False LOC120570321
XM_039818611.1 mRNA downstream 317427 15978286 ~ 15980899 (+) True upp2
XR_005640926.1 other upstream 503521 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1425337 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 1982061 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2305322 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2379541 13049758 ~ 13279866 (+) True G123539
TU167128 other downstream 438412 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 1336922 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1467022 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 2199301 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 2199894 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile