RNA id: TU167128


Basic Information

Item Value
RNA id TU167128
length 806
RNA type TUCP
GC content 0.46
exon number 4
gene id dap1b
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16099271 ~ 16101642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAGGACGTCATCTCCGTTAGAGCATAAAAACAAGTGCGCAGTGAAAAGAGTTTCGTACTTTCTTTGTAGTTTCTCTGGACAGTTACGAAAATGGTGCAGCAACTCTCCAAATCTGGAGCGAAGGAGACTCCTCTGCTGAAAGCTGGTCACCCTCCGGCAGTGATGGCAGGAGGTAAACGGGTAGCCAAGAAAAGCTTGGAGGATGGTTCCAGCCATGGAATTCCAGAGAAGGAGACCAAGAGGTCTGATAAACTGAGCAGGTCCCTCACTACCTCTAACAGGATGCAACAAGTTAATATTCTTCTGGCAGGAACTCTTGACaaaCTGAGCCATGACTTCACAGAGATGCCAGTGAGCGTGAGGCACAGCAAGTTGCGCCCTGCAGTGGAGAAGCCCCACTGCCCGCGGATCTTTTTCATCCAGCAGCCGAGGAAGTTTTGAACGACGCGTGTTCAAGAATGCCCCAGAGGCAACCGTGTCAAGTCAGCTGTGAAAGACAGACATGAGGCATTAGACACGAGGGGACTGACAGGTTGTGTATAAAGTGTCAGTGTTTATGGAGAGACTTACTTTGTAGGCTGTGCTTGTTTGAGAGAATACTATCAACCAGCATTTAATGTGCCTTTCCTTGTTATAAAAAATGCTGTACTTGTATTTCTCAGCTGATGAAAACCAGATTGTTTGGGGTATGTTTAATGTGAGGGTTGGGGGGGTTAAGTGAGGTTTTTGAGatggggttgttttttttgtttttctttctctcagtgAAATCTTCACATGTATTGCTTGGCACTTActagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167099 lncRNA upstream 121417 15970982 ~ 15977854 (+) False LOC120570321
TU167069 lncRNA upstream 186843 15912215 ~ 15912428 (+) True G124229
XR_005640866.1 lncRNA upstream 208265 15888137 ~ 15891006 (+) True LOC120569337
XR_005641030.1 lncRNA upstream 359313 15715606 ~ 15739958 (+) True LOC120570206
TU167012 lncRNA upstream 438412 15659407 ~ 15660859 (+) False galnt13
TU167186 lncRNA downstream 178988 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 179333 16280944 ~ 16285287 (+) True G124325
XR_005640929.1 lncRNA downstream 203152 16304763 ~ 16310641 (+) True LOC120569637
TU167209 lncRNA downstream 279636 16381247 ~ 16381693 (+) True G124339
TU167248 lncRNA downstream 312998 16414609 ~ 16416452 (+) True G124371
XM_039818606.1 mRNA upstream 2934 16013565 ~ 16096337 (+) True LOC120570318
XM_039818611.1 mRNA upstream 118372 15978286 ~ 15980899 (+) True upp2
XM_039818612.1 mRNA upstream 121397 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA upstream 121397 15973261 ~ 15977874 (+) False LOC120570321
XM_039818616.1 mRNA upstream 189419 15902687 ~ 15909852 (+) True LOC120570324
XM_039818983.1 mRNA downstream 3825 16105436 ~ 16207591 (+) True tanc1b
XM_039818986.1 mRNA downstream 3825 16105436 ~ 16207591 (+) False tanc1b
XM_039818984.1 mRNA downstream 3825 16105436 ~ 16207591 (+) False tanc1b
XM_039818987.1 mRNA downstream 3825 16105436 ~ 16207591 (+) False tanc1b
XM_039818989.1 mRNA downstream 3825 16105436 ~ 16207591 (+) False tanc1b
XR_005640926.1 other upstream 943385 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1865201 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2421925 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2745186 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2819405 13049758 ~ 13279866 (+) True G123539
TU167490 other downstream 896170 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1026270 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1758549 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1759142 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 1759261 17860872 ~ 17880726 (+) False hoxd10a

Expression Profile